Overview
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of collagen vs. uniprot
Match: gi|18202250|sp|O93484|CO1A2_ONCMY (RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen; Flags: Precursor [Oncorhynchus mykiss]) HSP 1 Score: 148.288 bits (373), Expect = 4.045e-34 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 7452 IKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFN-GHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNH--PIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 + P+G+K PA+TC+ + +S+P+ G YWIDPN G I DA+K +C S TCI P IA K W+ ++ N H W T+ E Y+ +QL+F++ + +A Q +T+ C N + G +G + K L +D LR + + + V+ D C ++TVIE +N + PI D+ I + D +FGL VCF Sbjct: 1139 LLTPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCIADAIKAYCDFSTGHTCIHPHPESIARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLANQATQNITYHCKNSVAYMDGENGNLKKAV--LLQGSNDVELRAEGNSRFTFNVLEDGCTRHTGQWSKTVIEYRTNKPSRLPILDIAPLDIGEADQEFGLDIGPVCF 1355 HSP 2 Score: 148.288 bits (373), Expect = 4.045e-34 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = -3 Query: 92 IKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFN-GHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNH--PIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 709 + P+G+K PA+TC+ + +S+P+ G YWIDPN G I DA+K +C S TCI P IA K W+ ++ N H W T+ E Y+ +QL+F++ + +A Q +T+ C N + G +G + K L +D LR + + + V+ D C ++TVIE +N + PI D+ I + D +FGL VCF Sbjct: 1139 LLTPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCIADAIKAYCDFSTGHTCIHPHPESIARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLANQATQNITYHCKNSVAYMDGENGNLKKAV--LLQGSNDVELRAEGNSRFTFNVLEDGCTRHTGQWSKTVIEYRTNKPSRLPILDIAPLDIGEADQEFGLDIGPVCF 1355
BLAST of collagen vs. uniprot
Match: gi|8039779|sp|P02465|CO1A2_BOVIN (RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen; Flags: Precursor) HSP 1 Score: 145.206 bits (365), Expect = 3.762e-33 Identity = 74/251 (29.48%), Postives = 121/251 (48.21%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWH-TTNFNGHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL--ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 A Q RSPT + D + A L N + P+G++ PA+TC+ L +S+P G YWIDPN G DA+KV+C S +TCI+ DI +K W+ + H W+ T+ + +Y++ +QL+F++ + A Q +T+ C N I D + + +L ++D ++ + + YTV+ D C + +T+IE +N + PI D+ I D + L VCF Sbjct: 1115 YRADQPRSPTS-LRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNS-IAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCF 1363 HSP 2 Score: 145.206 bits (365), Expect = 3.762e-33 Identity = 74/251 (29.48%), Postives = 121/251 (48.21%), Query Frame = -3 Query: 92 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWH-TTNFNGHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL--ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 796 A Q RSPT + D + A L N + P+G++ PA+TC+ L +S+P G YWIDPN G DA+KV+C S +TCI+ DI +K W+ + H W+ T+ + +Y++ +QL+F++ + A Q +T+ C N I D + + +L ++D ++ + + YTV+ D C + +T+IE +N + PI D+ I D + L VCF Sbjct: 1115 YRADQPRSPTS-LRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNS-IAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCF 1363 HSP 3 Score: 58.9214 bits (141), Expect = 8.023e-7 Identity = 50/106 (47.17%), Postives = 59/106 (55.66%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDG------HEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G +GK G+ G+ GPAG GP G +GP G G G G +G PGD GP G GL G G G H G QG PG VGP+G G +GP G G G+ G PG +G Sbjct: 968 GPVGKHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKDGRIGQPGAVG 1073 HSP 4 Score: 58.9214 bits (141), Expect = 8.023e-7 Identity = 50/106 (47.17%), Postives = 59/106 (55.66%), Query Frame = -3 Query: 2396 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDG------HEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2695 G +GK G+ G+ GPAG GP G +GP G G G G +G PGD GP G GL G G G H G QG PG VGP+G G +GP G G G+ G PG +G Sbjct: 968 GPVGKHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKDGRIGQPGAVG 1073 HSP 5 Score: 58.151 bits (139), Expect = 1.341e-6 Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 5463 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGH------EGGQGTPGFV------GPSGEPGKSGPVGSPGAGGQRGFPG 5756 AG++G G G +GPAG+RGP G+ G G G +G G G PG+ GP GK+G G G DG G +G PG + GPSG+PGK+G G G G RG PG Sbjct: 412 AGVMGPAGSRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPG 521 HSP 6 Score: 58.151 bits (139), Expect = 1.341e-6 Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = -3 Query: 2405 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGH------EGGQGTPGFV------GPSGEPGKSGPVGSPGAGGQRGFPG 2698 AG++G G G +GPAG+RGP G+ G G G +G G G PG+ GP GK+G G G DG G +G PG + GPSG+PGK+G G G G RG PG Sbjct: 412 AGVMGPAGSRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPG 521
BLAST of collagen vs. uniprot
Match: gi|8134352|sp|O46392|CO1A2_CANFA (RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen; Flags: Precursor) HSP 1 Score: 142.124 bits (357), Expect = 3.337e-32 Identity = 72/251 (28.69%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWH-TTNFNGHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL--ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 A Q RSP + D + A L N + P+G++ PA+TC+ L +S+P G YWIDPN G DA+KV+C S +TCI+ +I K W+ + H W+ T+ + +Y++ +QL+F++ + A Q +T+ C N I D + + +L ++D ++ + + YTV+ D C + +T+IE +N + PI D+ I D +F + VCF Sbjct: 1117 YRADQPRSPPS-LRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNS-IAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEFRVDVGPVCF 1365 HSP 2 Score: 142.124 bits (357), Expect = 3.337e-32 Identity = 72/251 (28.69%), Postives = 120/251 (47.81%), Query Frame = -3 Query: 92 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWH-TTNFNGHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL--ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 796 A Q RSP + D + A L N + P+G++ PA+TC+ L +S+P G YWIDPN G DA+KV+C S +TCI+ +I K W+ + H W+ T+ + +Y++ +QL+F++ + A Q +T+ C N I D + + +L ++D ++ + + YTV+ D C + +T+IE +N + PI D+ I D +F + VCF Sbjct: 1117 YRADQPRSPPS-LRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNS-IAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEFRVDVGPVCF 1365 HSP 3 Score: 55.8398 bits (133), Expect = 6.476e-6 Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 5463 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGH------EGGQGTPGFV------GPSGEPGKSGPVGSPGAGGQRGFPG 5756 AG++G G G +GPAG+RGP G+ G G G +G G G PG+ GP GK+G G G DG G +G PG + GP+G+PGK+G G G G RG PG Sbjct: 414 AGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGKEGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPG 523 HSP 4 Score: 55.8398 bits (133), Expect = 6.476e-6 Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = -3 Query: 2405 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGH------EGGQGTPGFV------GPSGEPGKSGPVGSPGAGGQRGFPG 2698 AG++G G G +GPAG+RGP G+ G G G +G G G PG+ GP GK+G G G DG G +G PG + GP+G+PGK+G G G G RG PG Sbjct: 414 AGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGKEGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPG 523
BLAST of collagen vs. uniprot
Match: gi|18202034|sp|O42350|CO1A2_LITCT (RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen; Flags: Precursor) HSP 1 Score: 140.198 bits (352), Expect = 1.430e-31 Identity = 67/220 (30.45%), Postives = 104/220 (47.27%), Query Frame = 3 Query: 7449 VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFN---GHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 VI P+G++ PA+TC+ L +S+P G YWIDPN G DA++VFC S +TCI +I K W+ N H W L + +Y +QL+F++ + +A Q +T+ C N ++ N + L +D LR + + Y+V+ D C +TVIE +N + PI D+ I +D + G + VCF Sbjct: 1135 VILTPEGSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTSDAIRVFCDFSSGETCIHANPDEITQKNWYINTSNKDKKHLWFGEILNGGTQFEYHDEGLTAKDMATQLAFMRLLANQASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELRAEGNTRFTYSVLEDGCTKHTGEWGKTVIEYRTNKPSRLPILDIAPLDIGGHDQEIGFEIGPVCF 1354 HSP 2 Score: 140.198 bits (352), Expect = 1.430e-31 Identity = 67/220 (30.45%), Postives = 104/220 (47.27%), Query Frame = -3 Query: 92 VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFN---GHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 712 VI P+G++ PA+TC+ L +S+P G YWIDPN G DA++VFC S +TCI +I K W+ N H W L + +Y +QL+F++ + +A Q +T+ C N ++ N + L +D LR + + Y+V+ D C +TVIE +N + PI D+ I +D + G + VCF Sbjct: 1135 VILTPEGSRKNPARTCRDLRLSHPEWTSGFYWIDPNQGCTSDAIRVFCDFSSGETCIHANPDEITQKNWYINTSNKDKKHLWFGEILNGGTQFEYHDEGLTAKDMATQLAFMRLLANQASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELRAEGNTRFTYSVLEDGCTKHTGEWGKTVIEYRTNKPSRLPILDIAPLDIGGHDQEIGFEIGPVCF 1354 HSP 3 Score: 57.7658 bits (138), Expect = 1.625e-6 Identity = 49/114 (42.98%), Postives = 62/114 (54.39%), Query Frame = 3 Query: 5460 LAGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQ------------GLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G+ G++G+ G++GP G RGP G G A G+ G PG G PG+ GPVG Q G G +G+ G +G +G PG G GE G +G GSPG G RG PGE G Sbjct: 104 FQGLPGENGEPGQTGPVGSRGPSGAPGKA---GEDGHPGKSGRPGERGPVGPQGARGFPGTPGLPGFKGIRGHTGSDGQKGAPGAAGVKGENGANGDNGSPGQAGARGLPGERG 214 HSP 4 Score: 57.7658 bits (138), Expect = 1.625e-6 Identity = 49/114 (42.98%), Postives = 62/114 (54.39%), Query Frame = -3 Query: 2396 LAGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQ------------GLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2701 G+ G++G+ G++GP G RGP G G A G+ G PG G PG+ GPVG Q G G +G+ G +G +G PG G GE G +G GSPG G RG PGE G Sbjct: 104 FQGLPGENGEPGQTGPVGSRGPSGAPGKA---GEDGHPGKSGRPGERGPVGPQGARGFPGTPGLPGFKGIRGHTGSDGQKGAPGAAGVKGENGANGDNGSPGQAGARGLPGERG 214
BLAST of collagen vs. uniprot
Match: gi|82202407|sp|Q6P4Z2|CO2A1_XENTR (RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Flags: Precursor) HSP 1 Score: 139.428 bits (350), Expect = 2.397e-31 Identity = 72/233 (30.90%), Postives = 109/233 (46.78%), Query Frame = 3 Query: 7413 DDSMTAKLLGGNV--IKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTT--NFNGHSWI-HTLTKKNEVKY----SIPNS---QLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 D T K L + I++P GTK PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P I K W + H W T+ + Y S PN+ Q++FL+ S A Q +T+ C N ++ N + L +D +R + + Y + D C+ ++TVIE + + PI D+ I D +FG+ VCF Sbjct: 1259 DVEATLKSLNNQIESIRSPDGTKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTVDAIKVFCNMETGETCVYPNPSKIPKKNWWSAKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQMTFLRLLSTDATQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALEDGCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 1491 HSP 2 Score: 139.428 bits (350), Expect = 2.397e-31 Identity = 72/233 (30.90%), Postives = 109/233 (46.78%), Query Frame = -3 Query: 92 DDSMTAKLLGGNV--IKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTT--NFNGHSWI-HTLTKKNEVKY----SIPNS---QLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 748 D T K L + I++P GTK PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P I K W + H W T+ + Y S PN+ Q++FL+ S A Q +T+ C N ++ N + L +D +R + + Y + D C+ ++TVIE + + PI D+ I D +FG+ VCF Sbjct: 1259 DVEATLKSLNNQIESIRSPDGTKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTVDAIKVFCNMETGETCVYPNPSKIPKKNWWSAKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQMTFLRLLSTDATQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALEDGCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 1491
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15040033 (dd_smedV4_702_0_1|m.35199|m.6295) HSP 1 Score: 372.089 bits (954), Expect = 3.351e-105 Identity = 153/237 (64.56%), Postives = 200/237 (84.39%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIISKNDSQFGLKFEEVCFS* 8075 +MAMQMRSPTKG+ YGDD + A+LLG N IKNP+GTK+VPA TCK LSV +PN PDGEYWIDPN GR++DAVKV+C+IS+Q+TCIKPI+ +I+++ W + + NGH+W+ ++ K E++YSIPN Q++FLK S+ A+QRVTFTC+NHPIIGN+ K+NKVT+PRLLADDD+I+++ H LKYTVI D+CQY KSSEAE++IEV N AN+ PIRD+GV+II+ S+FG+ EEVCFS* Sbjct: 1050 IMAMQMRSPTKGVTYGDDPLAAELLGNNAIKNPEGTKEVPAITCKQLSVKHPNLPDGEYWIDPNGGRVNDAVKVYCRISEQKTCIKPINNEISLRSWKSHSANGHTWLKSILNKEEIQYSIPNGQIAFLKVNSDSAVQRVTFTCENHPIIGNEEKLNKVTAPRLLADDDTIIKMTHSHLKYTVIKDECQYSKSSEAESIIEVRNYANLLPIRDIGVSIINNRKSKFGVTIEEVCFS* 1286 HSP 2 Score: 372.089 bits (954), Expect = 3.351e-105 Identity = 153/237 (64.56%), Postives = 200/237 (84.39%), Query Frame = -3 Query: 86 VMAMQMRSPTKGIMYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIISKNDSQFGLKFEEVCFS* 796 +MAMQMRSPTKG+ YGDD + A+LLG N IKNP+GTK+VPA TCK LSV +PN PDGEYWIDPN GR++DAVKV+C+IS+Q+TCIKPI+ +I+++ W + + NGH+W+ ++ K E++YSIPN Q++FLK S+ A+QRVTFTC+NHPIIGN+ K+NKVT+PRLLADDD+I+++ H LKYTVI D+CQY KSSEAE++IEV N AN+ PIRD+GV+II+ S+FG+ EEVCFS* Sbjct: 1050 IMAMQMRSPTKGVTYGDDPLAAELLGNNAIKNPEGTKEVPAITCKQLSVKHPNLPDGEYWIDPNGGRVNDAVKVYCRISEQKTCIKPINNEISLRSWKSHSANGHTWLKSILNKEEIQYSIPNGQIAFLKVNSDSAVQRVTFTCENHPIIGNEEKLNKVTAPRLLADDDTIIKMTHSHLKYTVIKDECQYSKSSEAESIIEVRNYANLLPIRDIGVSIINNRKSKFGVTIEEVCFS* 1286 HSP 3 Score: 92.0485 bits (227), Expect = 4.177e-18 Identity = 213/351 (60.68%), Postives = 244/351 (69.52%), Query Frame = 3 Query: 4209 LIKCSFTPSGSVFFLGILSCIQIAFGQFKSLQEAVGPPGIRXXXXXXXXXXXXXXXXAAGSTGFMGKDGVRGPPGLIGPAGKPXXXXXXXXXXXXXXXXXXXEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKPGKLGPIGIAGTPGKDGQQGRRGNPGNIGVMXXXXXXXXXXXXXXXXNPGEVGPKGSEGDQGPIXXXXXXXXXXXXXXXXDRGRPGQIGENGPEGPLGMEGKPGTKGVRGEIGPNGSPGTPGQNG 5261 + K S SG++ IL + ++GQF++L EA GP GIRGNPG +GK GPDGD G++G G GKDG+RG PG GPAG G DGK+GV G G PG RGE G G +G+EG+ GP GY G GEKGD G GE GD G+IGP G GP GP GQ GP+G QG G RG GPDG VGPPGP+G+MG G PG PGE+G KGE G EG KGGKG +GK G+N K GK G G G G +G+QGR+G G+IG+ G QG G RG RG +GNPG+ GPKGS+GDQGPIGLEGKPG GP G KGDRGRPG GE GP GP G G G KG RGEIGPNGSPGTPG NG Sbjct: 1 MFKNSIF-SGAILL--ILIYVDFSYGQFRTLNEATGPIGIRGNPGKRGKIGPDGDPGSSGPPGPPGKDGLRGAPGPNGPAGGAGPDGKSGVTGNTGPPGSRGEQGPPGPVGKEGLTGPNGYSGPSGEKGDSGSIGEQGDPGDIGPQGPAGPLGPPGQSGPTGPQGTVGERGPHGPDGVVGPPGPEGRMGSPGSPGRPGELGKKGEGGDEGLKGGKGENGKTGINGKSGKPGIRGPIGPVGINGKQGRKGELGDIGLTGPQGLIGPRGVRGTVGNPGDNGPKGSQGDQGPIGLEGKPGPFGPKGQKGDRGRPGPQGETGPLGPGGPIGPDGAKGSRGEIGPNGSPGTPGPNG 348 HSP 4 Score: 92.0485 bits (227), Expect = 4.177e-18 Identity = 213/351 (60.68%), Postives = 244/351 (69.52%), Query Frame = -3 Query: 2900 LIKCSFTPSGSVFFLGILSCIQIAFGQFKSLQEAVGPPGIRXXXXXXXXXXXXXXXGAAGSTGFMGKDGVRGPPGLIGPAGKPXXXXXXXXXXXXXXXXXXGEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLNAKPGKLGPIGIAGTPGKDGQQGRRGNPGNIGVMXXXXXXXXXXXXXXXGNPGEVGPKGSEGDQGPIXXXXXXXXXXXXXXXGDRGRPGQIGENGPEGPLGMEGKPGTKGVRGEIGPNGSPGTPGQNG 3952 + K S SG++ IL + ++GQF++L EA GP GIRGNPG +GK GPDGD G++G G GKDG+RG PG GPAG G DGK+GV G G PG RGE G G +G+EG+ GP GY G GEKGD G GE GD G+IGP G GP GP GQ GP+G QG G RG GPDG VGPPGP+G+MG G PG PGE+G KGE G EG KGGKG +GK G+N K GK G G G G +G+QGR+G G+IG+ G QG G RG RG +GNPG+ GPKGS+GDQGPIGLEGKPG GP G KGDRGRPG GE GP GP G G G KG RGEIGPNGSPGTPG NG Sbjct: 1 MFKNSIF-SGAILL--ILIYVDFSYGQFRTLNEATGPIGIRGNPGKRGKIGPDGDPGSSGPPGPPGKDGLRGAPGPNGPAGGAGPDGKSGVTGNTGPPGSRGEQGPPGPVGKEGLTGPNGYSGPSGEKGDSGSIGEQGDPGDIGPQGPAGPLGPPGQSGPTGPQGTVGERGPHGPDGVVGPPGPEGRMGSPGSPGRPGELGKKGEGGDEGLKGGKGENGKTGINGKSGKPGIRGPIGPVGINGKQGRKGELGDIGLTGPQGLIGPRGVRGTVGNPGDNGPKGSQGDQGPIGLEGKPGPFGPKGQKGDRGRPGPQGETGPLGPGGPIGPDGAKGSRGEIGPNGSPGTPGPNG 348 HSP 5 Score: 77.0258 bits (188), Expect = 1.734e-13 Identity = 125/264 (47.35%), Postives = 151/264 (57.20%), Query Frame = 3 Query: 5475 GKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGA---------------------GGQRGFPGELGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGITGPSGVLGVPGTYGPNGAPGPEGTLGKQGPIGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRISKPQPRGAGPAGPKGETGKPGLDGVPGEVGPSGK 6203 G+ G LG +G G+RGP G G G G +G+PGLRG PG G G +G G G+ G G G PG +G +G G GP+G+ G+ G G+PG G+ GKNG PG GKPGK G PG G G PGP GD G+ GP G G+ G G+ GVPG YGPNG+PG G LGKQGP G G G+ G PG GP+GPPG +G PG G + K +PR G AG +G GKPG+DG PG+VGP GK Sbjct: 399 GRKGSLGPTGLTGLRGPQGNPGKDGTLGPLGTPGLRGPPGSIGTPGLKGNIGPPGSKGKVGNAGKPGPLGKNGIDGSEGPIGNAGSPGFPGPNGDPGPNGPPGSLGLAGLVGYPGNQGLAGKNGNPGVEGKPGKAGTPGSPGKPGVPGPVGDVGNIGPPGPNGLKGAPGIYGVPGNYGPNGSPGDLGPLGKQGPEGLVGAPGLAGSPGPDGPRGPPGANGSPGSAGGEGVEKHKPRSVGSAGIRGPEGKPGMDGFPGDVGPPGK 662 HSP 6 Score: 77.0258 bits (188), Expect = 1.734e-13 Identity = 125/264 (47.35%), Postives = 151/264 (57.20%), Query Frame = -3 Query: 1958 GKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGA---------------------GGQRGFPGELGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGARGITGPSGVLGVPGTYGPNGAPGPEGTLGKQGPIGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRISKPQPRGAGPAGPKGETGKPGLDGVPGEVGPSGK 2686 G+ G LG +G G+RGP G G G G +G+PGLRG PG G G +G G G+ G G G PG +G +G G GP+G+ G+ G G+PG G+ GKNG PG GKPGK G PG G G PGP GD G+ GP G G+ G G+ GVPG YGPNG+PG G LGKQGP G G G+ G PG GP+GPPG +G PG G + K +PR G AG +G GKPG+DG PG+VGP GK Sbjct: 399 GRKGSLGPTGLTGLRGPQGNPGKDGTLGPLGTPGLRGPPGSIGTPGLKGNIGPPGSKGKVGNAGKPGPLGKNGIDGSEGPIGNAGSPGFPGPNGDPGPNGPPGSLGLAGLVGYPGNQGLAGKNGNPGVEGKPGKAGTPGSPGKPGVPGPVGDVGNIGPPGPNGLKGAPGIYGVPGNYGPNGSPGDLGPLGKQGPEGLVGAPGLAGSPGPDGPRGPPGANGSPGSAGGEGVEKHKPRSVGSAGIRGPEGKPGMDGFPGDVGPPGK 662
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15002271 (Asxlregen_comp67208_c0_seq1|m.27270|m.10319) HSP 1 Score: 259.996 bits (663), Expect = 9.941e-70 Identity = 113/233 (48.50%), Postives = 149/233 (63.95%), Query Frame = 3 Query: 7380 MRSPTKGIMYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPII-GNDGKINKVTSPRLLADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIISKNDSQFGLKFEEVCFS* 8075 +RSPTKG+ + DD A G N I P+GTK+VPA++CKHLS NP+ DGEYWIDPN GR+ DAV V+C+I+ QQTCIKPI W H W T+ E +Y I N QL++LKA SE A Q+++ C N II GK++ V + LL DDD+IL + HPK ++ VI D+CQY K SEAET++EV A+ PI+DVG+ I S + G++ EVC+S* Sbjct: 1064 LRSPTKGLTFSDDPSVAHSFGNNAIITPRGTKEVPARSCKHLSEHNPDLSDGEYWIDPNGGRVSDAVPVYCRIATQQTCIKPISKIYKTASWFKKYQKDHVWFQTINGIGEFEYDIENYQLNYLKALSETATQQISLNCINQAIILDRQGKMSTVWT-SLLGDDDTILSLQHPKRRFKVIKDECQYEKFSEAETILEVRGKASRLPIKDVGLIIDSDRSRKVGIELGEVCYS* 1295 HSP 2 Score: 259.996 bits (663), Expect = 9.941e-70 Identity = 113/233 (48.50%), Postives = 149/233 (63.95%), Query Frame = -3 Query: 86 MRSPTKGIMYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPII-GNDGKINKVTSPRLLADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIISKNDSQFGLKFEEVCFS* 781 +RSPTKG+ + DD A G N I P+GTK+VPA++CKHLS NP+ DGEYWIDPN GR+ DAV V+C+I+ QQTCIKPI W H W T+ E +Y I N QL++LKA SE A Q+++ C N II GK++ V + LL DDD+IL + HPK ++ VI D+CQY K SEAET++EV A+ PI+DVG+ I S + G++ EVC+S* Sbjct: 1064 LRSPTKGLTFSDDPSVAHSFGNNAIITPRGTKEVPARSCKHLSEHNPDLSDGEYWIDPNGGRVSDAVPVYCRIATQQTCIKPISKIYKTASWFKKYQKDHVWFQTINGIGEFEYDIENYQLNYLKALSETATQQISLNCINQAIILDRQGKMSTVWT-SLLGDDDTILSLQHPKRRFKVIKDECQYEKFSEAETILEVRGKASRLPIKDVGLIIDSDRSRKVGIELGEVCYS* 1295 HSP 3 Score: 96.2857 bits (238), Expect = 2.301e-19 Identity = 153/293 (52.22%), Postives = 179/293 (61.09%), Query Frame = 3 Query: 4386 GSTGFMGKDGVRGPPGLIGPAGKPXXXXXXXXXXXXXXXXXXXEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKPGKLGPIGIAGTPGKDGQQGRRGNPGNIGVMXXXXXXXXXXXXXXXXNPGEVGPKGSEGDQGPIXXXXXXXXXXXXXXXXDRGRPGQIGENGPEGPLGMEGKPGTKGVRGEIGPNGSPGTPGQNGV 5264 G++G GKDG G G++GP G PRGEPGL GS+G EG GP G GL G+KGD GL G G G G G G +GP G+ GP+G QG TG RG G DG G GPQG +GP G G PGE+GNKG +G G KG KG SG PGL K G G +G G PG DG+ G RG G +G G G GQRG RG GNPG GPKGS+G++GPIG+EGK G+ GP G KGD GRPG+ G+ GP G G+ G G KG RGE GP+GSPG PG +G+ Sbjct: 82 GASGIPGKDGTPGSHGVVGPIG------------------PRGEPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPGQSGIPGEIGNKGIRGESGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGKVGQRGQRGPSGNPGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPGETGDEGPRGERGVVGPAGNKGSRGESGPDGSPGNPGTDGI 356 HSP 4 Score: 96.2857 bits (238), Expect = 2.301e-19 Identity = 153/293 (52.22%), Postives = 179/293 (61.09%), Query Frame = -3 Query: 2897 GSTGFMGKDGVRGPPGLIGPAGKPXXXXXXXXXXXXXXXXXXGEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLNAKPGKLGPIGIAGTPGKDGQQGRRGNPGNIGVMXXXXXXXXXXXXXXXGNPGEVGPKGSEGDQGPIXXXXXXXXXXXXXXXGDRGRPGQIGENGPEGPLGMEGKPGTKGVRGEIGPNGSPGTPGQNGV 3775 G++G GKDG G G++GP G PRGEPGL GS+G EG GP G GL G+KGD GL G G G G G G +GP G+ GP+G QG TG RG G DG G GPQG +GP G G PGE+GNKG +G G KG KG SG PGL K G G +G G PG DG+ G RG G +G G G GQRG RG GNPG GPKGS+G++GPIG+EGK G+ GP G KGD GRPG+ G+ GP G G+ G G KG RGE GP+GSPG PG +G+ Sbjct: 82 GASGIPGKDGTPGSHGVVGPIG------------------PRGEPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPGQSGIPGEIGNKGIRGESGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGKVGQRGQRGPSGNPGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPGETGDEGPRGERGVVGPAGNKGSRGESGPDGSPGNPGTDGI 356 HSP 5 Score: 57.7658 bits (138), Expect = 1.070e-7 Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 3 Query: 5463 AGILGKDGDLGKSGPAGIRGP---PGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPG---KSGPVGSPGAGGQRGFPGELGVH 5771 AGI+G G +GK G G RGP PG GP G +G+ G G+ G G GP G++G G+ G G EG +G G VGP+G G +SGP GSPG G G PG+ G+H Sbjct: 255 AGIVGPQGPVGKVGQRGQRGPSGNPGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPGETGDEGPRGERGVVGPAGNKGSRGESGPDGSPGNPGTDGIPGKDGLH 363 HSP 6 Score: 57.7658 bits (138), Expect = 1.070e-7 Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = -3 Query: 2390 AGILGKDGDLGKSGPAGIRGP---PGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPG---KSGPVGSPGAGGQRGFPGELGVH 2698 AGI+G G +GK G G RGP PG GP G +G+ G G+ G G GP G++G G+ G G EG +G G VGP+G G +SGP GSPG G G PG+ G+H Sbjct: 255 AGIVGPQGPVGKVGQRGQRGPSGNPGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPGETGDEGPRGERGVVGPAGNKGSRGESGPDGSPGNPGTDGIPGKDGLH 363 HSP 7 Score: 55.8398 bits (133), Expect = 4.912e-7 Identity = 48/124 (38.71%), Postives = 63/124 (50.81%), Query Frame = 3 Query: 5460 LAGILGKDGDLGKSGPAGIRGPPGELGPA---------------------GGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 5768 LAG+ G +G+ G GP G+RGP G +GPA G +G IG PG GIPG+ +G +G+ G+ G G +G G PG G +G G GP G PG G+ G GE G+ Sbjct: 137 LAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPGQSGIPGE---IGNKGIRGESGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGI 257 HSP 8 Score: 55.8398 bits (133), Expect = 4.912e-7 Identity = 48/124 (38.71%), Postives = 63/124 (50.81%), Query Frame = -3 Query: 2393 LAGILGKDGDLGKSGPAGIRGPPGELGPA---------------------GGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 2701 LAG+ G +G+ G GP G+RGP G +GPA G +G IG PG GIPG+ +G +G+ G+ G G +G G PG G +G G GP G PG G+ G GE G+ Sbjct: 137 LAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPGQSGIPGE---IGNKGIRGESGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGI 257 HSP 9 Score: 55.4546 bits (132), Expect = 5.435e-7 Identity = 74/187 (39.57%), Postives = 88/187 (47.06%), Query Frame = 3 Query: 5460 LAGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGT---PGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGITGPSGVLGVPGTYGPNGAP---GPEGTLGKQGPIGK 6002 LAG +G +G G G G+ G G++G AG KG G PGL+G G GP G+ G AG +G G G QGT PG +GP G G G G PG G +G GE G+ G G GN G G TGPSG LG PG G +G P G G +G QGP+GK Sbjct: 110 LAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPGQSGIPGEIGNKGIRGESGIKGAKGDSGNPGLA------------------------------GKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGK 266 HSP 10 Score: 55.4546 bits (132), Expect = 5.435e-7 Identity = 74/187 (39.57%), Postives = 88/187 (47.06%), Query Frame = -3 Query: 2159 LAGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGT---PGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGARGITGPSGVLGVPGTYGPNGAP---GPEGTLGKQGPIGK 2701 LAG +G +G G G G+ G G++G AG KG G PGL+G G GP G+ G AG +G G G QGT PG +GP G G G G PG G +G GE G+ G G GN G G TGPSG LG PG G +G P G G +G QGP+GK Sbjct: 110 LAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPGQSGIPGEIGNKGIRGESGIKGAKGDSGNPGLA------------------------------GKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGK 266 HSP 11 Score: 51.2174 bits (121), Expect = 9.848e-6 Identity = 51/110 (46.36%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 5463 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRG---IPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPV------GSPGAGGQRGFPGELG 5765 +GI G GD G G AG GP G LGP G G G PG+RG I G GPVGK G GQ+G G+ PG GP G G+ GP+ GS G GQ+G PG G Sbjct: 213 SGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGKVGQRGQRGPSGN------PGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPG 316 HSP 12 Score: 51.2174 bits (121), Expect = 9.848e-6 Identity = 51/110 (46.36%), Postives = 58/110 (52.73%), Query Frame = -3 Query: 2396 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRG---IPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPV------GSPGAGGQRGFPGELG 2698 +GI G GD G G AG GP G LGP G G G PG+RG I G GPVGK G GQ+G G+ PG GP G G+ GP+ GS G GQ+G PG G Sbjct: 213 SGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGKVGQRGQRGPSGN------PGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPG 316
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15036469 (dd_smedV4_1070_0_1|m.1593|m.7941) HSP 1 Score: 196.052 bits (497), Expect = 7.599e-50 Identity = 91/239 (38.08%), Postives = 129/239 (53.97%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIIS--KNDSQFGLKFEEVCFS* 8075 V M R I+ DD + AK LG + I P GT + PA++C HL+ NP+ PDG YWIDPN G+IDDAV+V+CKI +++TCIKP+ I ++K FN W + YS+ Q++FLK S KA Q +T C N P+I N V R+ D+D IL + Y V+ D+CQ+ + T +E+++ PI+D+ V ++ SQ EEVCF * Sbjct: 1066 VATMSNRQQGYMIIQADDPLIAKYLGNDAISKPLGTSNSPARSCLHLAEMNPSFPDGIYWIDPNGGKIDDAVQVYCKIKEKKTCIKPLVFKIQLQK---PKFN---WFSQSNDNKFISYSLDQQQMTFLKMISNKASQFITINCRNMPVI-----KNSVKPLRIFTDNDIILDSSDQIFSYKVLEDNCQHNSQDLSSTRLEITSRPTRLPIKDIEVDTVNVRSERSQIEYNIEEVCFY* 1293 HSP 2 Score: 196.052 bits (497), Expect = 7.599e-50 Identity = 91/239 (38.08%), Postives = 129/239 (53.97%), Query Frame = -3 Query: 86 VMAMQMRSPTKGIMYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIIS--KNDSQFGLKFEEVCFS* 796 V M R I+ DD + AK LG + I P GT + PA++C HL+ NP+ PDG YWIDPN G+IDDAV+V+CKI +++TCIKP+ I ++K FN W + YS+ Q++FLK S KA Q +T C N P+I N V R+ D+D IL + Y V+ D+CQ+ + T +E+++ PI+D+ V ++ SQ EEVCF * Sbjct: 1066 VATMSNRQQGYMIIQADDPLIAKYLGNDAISKPLGTSNSPARSCLHLAEMNPSFPDGIYWIDPNGGKIDDAVQVYCKIKEKKTCIKPLVFKIQLQK---PKFN---WFSQSNDNKFISYSLDQQQMTFLKMISNKASQFITINCRNMPVI-----KNSVKPLRIFTDNDIILDSSDQIFSYKVLEDNCQHNSQDLSSTRLEITSRPTRLPIKDIEVDTVNVRSERSQIEYNIEEVCFY* 1293 HSP 3 Score: 54.6842 bits (130), Expect = 9.314e-7 Identity = 131/272 (48.16%), Postives = 155/272 (56.99%), Query Frame = 3 Query: 4404 GKDGVRGPPGLIGPAG---KPXXXXXXXXXXXXXXXXXXXEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAKPGKLGPIGIAGTPGKDGQQGRRGNPGNIGVMXXXXXXXXXXXXXXXXNPGEVGPKGSEGDQGPIXXXXXXXXXXXXXXXXDRGRPGQIGENGPEGPLGMEGKPGTKGV 5210 GKDG +G GLIGP G KPG DG G G G GP G G G G +G GP G G +GEKG G G GD+G +G + GP G G PGPSG+QG G RG+ G DG G PGP G G GPPG G G KG G +G G G G PG+N PG +G GI G+ GKDG G +G G +G++G QG SG G +G +G PG G KG+EG GP+G G PG+ G G G+RG G G GP+GP G+ G G KGV Sbjct: 80 GKDGPQGVLGLIGPTGINGKPGVDGSIGAPGPVGPDGPSGPTGPVGMPGNQGPDGPSGSKGPVGEKGPDGPQGNPGDIGVLG---LPGPPGHKGAPGPSGRQGPQGPRGLQGVDGLPGQPGPLGPQGVPGPPGMMGPTGVKGYAGKQGVLGSSGDPGSPGVNGAPGPIGQPGIMGSRGKDGPIGIKGENGPLGLLGPQGLSGPPGLQGSLGPPGPQGSKGNEGKIGPVGPAGSPGSPGLIGEIGERGENGPFGNPGPQGPRGLRGSAGPKGV 348 HSP 4 Score: 54.6842 bits (130), Expect = 9.314e-7 Identity = 131/272 (48.16%), Postives = 155/272 (56.99%), Query Frame = -3 Query: 2951 GKDGVRGPPGLIGPAG---KPXXXXXXXXXXXXXXXXXXGEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLNAKPGKLGPIGIAGTPGKDGQQGRRGNPGNIGVMXXXXXXXXXXXXXXXGNPGEVGPKGSEGDQGPIXXXXXXXXXXXXXXXGDRGRPGQIGENGPEGPLGMEGKPGTKGV 3757 GKDG +G GLIGP G KPG DG G G G GP G G G G +G GP G G +GEKG G G GD+G +G + GP G G PGPSG+QG G RG+ G DG G PGP G G GPPG G G KG G +G G G G PG+N PG +G GI G+ GKDG G +G G +G++G QG SG G +G +G PG G KG+EG GP+G G PG+ G G G+RG G G GP+GP G+ G G KGV Sbjct: 80 GKDGPQGVLGLIGPTGINGKPGVDGSIGAPGPVGPDGPSGPTGPVGMPGNQGPDGPSGSKGPVGEKGPDGPQGNPGDIGVLG---LPGPPGHKGAPGPSGRQGPQGPRGLQGVDGLPGQPGPLGPQGVPGPPGMMGPTGVKGYAGKQGVLGSSGDPGSPGVNGAPGPIGQPGIMGSRGKDGPIGIKGENGPLGLLGPQGLSGPPGLQGSLGPPGPQGSKGNEGKIGPVGPAGSPGSPGLIGEIGERGENGPFGNPGPQGPRGLRGSAGPKGV 348 HSP 5 Score: 52.7582 bits (125), Expect = 3.707e-6 Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = 3 Query: 5484 GDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G GK GP GI+G G LG G +G G PGL+G G GP G +G G+ G G G G+PG +G GE G++GP G+PG G RG G G Sbjct: 251 GSRGKDGPIGIKGENGPLGLLGPQGLSGPPGLQGSLGPPGPQGSKGNEGKIGPVGPAGSPGSPGLIGEIGERGENGPFGNPGPQGPRGLRGSAG 344 HSP 6 Score: 52.7582 bits (125), Expect = 3.707e-6 Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = -3 Query: 2396 GDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2677 G GK GP GI+G G LG G +G G PGL+G G GP G +G G+ G G G G+PG +G GE G++GP G+PG G RG G G Sbjct: 251 GSRGKDGPIGIKGENGPLGLLGPQGLSGPPGLQGSLGPPGPQGSKGNEGKIGPVGPAGSPGSPGLIGEIGERGENGPFGNPGPQGPRGLRGSAG 344 HSP 7 Score: 51.6026 bits (122), Expect = 7.520e-6 Identity = 48/108 (44.44%), Postives = 55/108 (50.93%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQR------GFPGELGVH 5771 G++GK G G G G G G LGPAG GK G+PG G PG G L+G+ G DG G G PG GP G GK GP G PG GQ+ G PG G+ Sbjct: 491 GVVGKPGQQGSEGKLGPEGLVGNLGPAGQPGKEGTPGPDGKPGTNG------LSGKDGEDGDSGPVGAPGADGPQGPKGKDGPPGFPGLIGQKGETGINGLPGRRGIS 592 HSP 8 Score: 51.6026 bits (122), Expect = 7.520e-6 Identity = 48/108 (44.44%), Postives = 55/108 (50.93%), Query Frame = -3 Query: 2390 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQR------GFPGELGVH 2695 G++GK G G G G G G LGPAG GK G+PG G PG G L+G+ G DG G G PG GP G GK GP G PG GQ+ G PG G+ Sbjct: 491 GVVGKPGQQGSEGKLGPEGLVGNLGPAGQPGKEGTPGPDGKPGTNG------LSGKDGEDGDSGPVGAPGADGPQGPKGKDGPPGFPGLIGQKGETGINGLPGRRGIS 592
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15029208 (SmedSxlregen_c102983_g1_i1|m.43148|m.11576) HSP 1 Score: 190.274 bits (482), Expect = 4.879e-48 Identity = 88/227 (38.77%), Postives = 126/227 (55.51%), Query Frame = 3 Query: 7404 MYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGH-SWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL-ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGV-TIISKNDSQFGLKFEEVCFS* 8075 + DD++ K LG +V+K P GTKD+PA+TCK L +NPN DG Y+IDPN G+ DDA +V C+ ++++CI+P +K W ++ + SW +T + Y I SQL FLK +S A QR+T C ++GN P +L +D D + N KY+VI D C+ T +E+ +A PIRD+ + T SK QFGL +VCFS* Sbjct: 1099 LLNDDALAVKYLGSDVVKKPLGTKDIPARTCKQLLDANPNLQDGFYYIDPNGGKADDAFRVLCRSQRKESCIEPKSPSYKLKHWDASDVTEYRSWFGEITGTFKFDYQIEASQLMFLKLFSTNARQRITINCSRLSVVGNS------EHPVILYSDHDEEVLRNGDLFKYSVIRDGCKNSAEIIDSTELEMDTEAIRLPIRDIALNTGSSKEQQQFGLDIGQVCFS* 1319 HSP 2 Score: 190.274 bits (482), Expect = 4.879e-48 Identity = 88/227 (38.77%), Postives = 126/227 (55.51%), Query Frame = -3 Query: 86 MYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGH-SWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL-ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGV-TIISKNDSQFGLKFEEVCFS* 757 + DD++ K LG +V+K P GTKD+PA+TCK L +NPN DG Y+IDPN G+ DDA +V C+ ++++CI+P +K W ++ + SW +T + Y I SQL FLK +S A QR+T C ++GN P +L +D D + N KY+VI D C+ T +E+ +A PIRD+ + T SK QFGL +VCFS* Sbjct: 1099 LLNDDALAVKYLGSDVVKKPLGTKDIPARTCKQLLDANPNLQDGFYYIDPNGGKADDAFRVLCRSQRKESCIEPKSPSYKLKHWDASDVTEYRSWFGEITGTFKFDYQIEASQLMFLKLFSTNARQRITINCSRLSVVGNS------EHPVILYSDHDEEVLRNGDLFKYSVIRDGCKNSAEIIDSTELEMDTEAIRLPIRDIALNTGSSKEQQQFGLDIGQVCFS* 1319 HSP 3 Score: 54.6842 bits (130), Expect = 8.816e-7 Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G+ G G G+ G GI GP G LGP +G G+PG RG G GPVG G G +G G G QG PG GP G PG GP G G+ G G G +G Sbjct: 156 GVKGDKGQRGRMGKDGILGPRGNLGP---QGPTGAPGRRGTVGSPGPVGNAGHPGVQGISGRPGNQGEPGMQGPPGLPGLRGPEGEKGSQGGLGIKGSIG 252 HSP 4 Score: 54.6842 bits (130), Expect = 8.816e-7 Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = -3 Query: 2396 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2695 G+ G G G+ G GI GP G LGP +G G+PG RG G GPVG G G +G G G QG PG GP G PG GP G G+ G G G +G Sbjct: 156 GVKGDKGQRGRMGKDGILGPRGNLGP---QGPTGAPGRRGTVGSPGPVGNAGHPGVQGISGRPGNQGEPGMQGPPGLPGLRGPEGEKGSQGGLGIKGSIG 252
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15040144 (dd_smedV4_740_0_1|m.36260|m.3408) HSP 1 Score: 184.496 bits (467), Expect = 2.673e-46 Identity = 87/226 (38.50%), Postives = 126/226 (55.75%), Query Frame = 3 Query: 7404 MYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL-ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIISKND-SQFGLKFEEVCFS* 8075 MY DD+ A +LG + I P GTKD+PA++C HL ++ + DG Y+IDPN G+++DA +VFCK+ +TCI P + + N + L+ Y I N+QL FLK S +A Q + C+N + + K P ++ D++ L + L Y VI D+CQ S EAETV+ VS D+ PIRD +T+ S +D S+F LK +VCFS* Sbjct: 1101 MYSDDANAANILGSDTISVPLGTKDLPARSCNHLKSTSSHLKDGTYFIDPNGGKMNDAFEVFCKMETGETCISPKQSSFSKISYSENPINKYISYGELSGIQRFDYVIDNTQLMFLKMVSTRANQEIKIACNNMAV------VEKTEYPAIIFTDNNRELTKDDHHLSYKVIKDECQNMSSEEAETVLLVSGDSKRLPIRD--LTLGSDSDISEFRLKLSKVCFS* 1318 HSP 2 Score: 184.496 bits (467), Expect = 2.673e-46 Identity = 87/226 (38.50%), Postives = 126/226 (55.75%), Query Frame = -3 Query: 86 MYGDDSMTAKLLGGNVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFNGHSWIHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL-ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEVSNDANIFPIRDVGVTIISKND-SQFGLKFEEVCFS* 757 MY DD+ A +LG + I P GTKD+PA++C HL ++ + DG Y+IDPN G+++DA +VFCK+ +TCI P + + N + L+ Y I N+QL FLK S +A Q + C+N + + K P ++ D++ L + L Y VI D+CQ S EAETV+ VS D+ PIRD +T+ S +D S+F LK +VCFS* Sbjct: 1101 MYSDDANAANILGSDTISVPLGTKDLPARSCNHLKSTSSHLKDGTYFIDPNGGKMNDAFEVFCKMETGETCISPKQSSFSKISYSENPINKYISYGELSGIQRFDYVIDNTQLMFLKMVSTRANQEIKIACNNMAV------VEKTEYPAIIFTDNNRELTKDDHHLSYKVIKDECQNMSSEEAETVLLVSGDSKRLPIRD--LTLGSDSDISEFRLKLSKVCFS* 1318 HSP 3 Score: 55.8398 bits (133), Expect = 4.609e-7 Identity = 57/116 (49.14%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 4380 AAGSTGFMGKDGVRGPPGLIGPAGKPXXXXXXXXXXXXXXXXXXXEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGIT 4727 A G G GK+G+ PG +GP GKPG GK G G G GP GEPG G MG +G+ GPPG G G+ GDPG PG G G++G G+ GPKGP GP+G+ G+ G G+T Sbjct: 954 AEGPVGPAGKEGL---PGKVGPLGKPGKPGKEGKPGKDGKTGPVGEPGHPGWMGPQGLLGPPGPQGDRGKPGDPGSPGIEGSPGDVGDQGVPGPKGPT---GPNGEMGLMGPMGVT 1063 HSP 4 Score: 55.8398 bits (133), Expect = 4.609e-7 Identity = 57/116 (49.14%), Postives = 70/116 (60.34%), Query Frame = -3 Query: 3434 AAGSTGFMGKDGVRGPPGLIGPAGKPXXXXXXXXXXXXXXXXXXGEPGLTGSMGQEGVAGPPGYPGLIGEKGDPGLPGEMGDVGNIGPTGIVGPKGPIGQPGPSGKQGITGNRGIT 3781 A G G GK+G+ PG +GP GKPG GK G G G GP GEPG G MG +G+ GPPG G G+ GDPG PG G G++G G+ GPKGP GP+G+ G+ G G+T Sbjct: 954 AEGPVGPAGKEGL---PGKVGPLGKPGKPGKEGKPGKDGKTGPVGEPGHPGWMGPQGLLGPPGPQGDRGKPGDPGSPGIEGSPGDVGDQGVPGPKGPT---GPNGEMGLMGPMGVT 1063 HSP 5 Score: 52.7582 bits (125), Expect = 3.752e-6 Identity = 51/118 (43.22%), Postives = 61/118 (51.69%), Query Frame = 3 Query: 5460 LAGILGKDGDLGKSGPAGIRG---------PPGELGPAGGKG------KIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 5768 L G++G G G SGP G+ G PPG LGP G G +IG+PG RGIPG G G G G G+ G +G G PG G +G+PG GP GS G G PG+ GV Sbjct: 308 LDGMIGIQGVKGDSGPQGLNGRSGIIGSVGPPGSLGPIGNPGNRGDPGRIGTPGTRGIPGTKGSQGPNGPPGINGSPGADGRDGLPGIDGANGKPGSRGPRGSQGL---AGLPGKDGV 422 HSP 6 Score: 52.7582 bits (125), Expect = 3.752e-6 Identity = 51/118 (43.22%), Postives = 61/118 (51.69%), Query Frame = -3 Query: 2393 LAGILGKDGDLGKSGPAGIRG---------PPGELGPAGGKG------KIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 2701 L G++G G G SGP G+ G PPG LGP G G +IG+PG RGIPG G G G G G+ G +G G PG G +G+PG GP GS G G PG+ GV Sbjct: 308 LDGMIGIQGVKGDSGPQGLNGRSGIIGSVGPPGSLGPIGNPGNRGDPGRIGTPGTRGIPGTKGSQGPNGPPGINGSPGADGRDGLPGIDGANGKPGSRGPRGSQGL---AGLPGKDGV 422
BLAST of collagen vs. RefSeq Human
Match: gi|48762934|ref|NP_000080.2| (collagen alpha-2(I) chain precursor [Homo sapiens]) HSP 1 Score: 138.658 bits (348), Expect = 1.389e-31 Identity = 62/220 (28.18%), Postives = 111/220 (50.45%), Query Frame = 3 Query: 7446 NVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFN-GHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL--ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 + P+G++ PA+TC+ L +S+P G YWIDPN G DA+KV+C S +TCI+ +I K W+ ++ + H W+ T+ ++ +Y++ +QL+F++ + A Q +T+ C N I D + + +L ++D ++ + + YTV+ D C + +T+IE +N + P D+ I D +F + VCF Sbjct: 1147 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNS-IAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCF 1365 HSP 2 Score: 138.658 bits (348), Expect = 1.389e-31 Identity = 62/220 (28.18%), Postives = 111/220 (50.45%), Query Frame = -3 Query: 92 NVIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNFN-GHSWI-HTLTKKNEVKYSIPN-------SQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLL--ADDDSILRINHPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 715 + P+G++ PA+TC+ L +S+P G YWIDPN G DA+KV+C S +TCI+ +I K W+ ++ + H W+ T+ ++ +Y++ +QL+F++ + A Q +T+ C N I D + + +L ++D ++ + + YTV+ D C + +T+IE +N + P D+ I D +F + VCF Sbjct: 1147 ETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCKNS-IAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCF 1365 HSP 3 Score: 58.9214 bits (141), Expect = 2.496e-7 Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 3 Query: 5463 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGH------EGGQGTPGFV------GPSGEPGKSGPVGSPGAGGQRGFPG 5756 AG++G G G SGPAG+RGP G+ G G G +G GL G PG+ GP GK+G G G DG G +G PG + GP+G+PGK+G G G G RG PG Sbjct: 414 AGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPG 523 HSP 4 Score: 58.9214 bits (141), Expect = 2.496e-7 Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = -3 Query: 2405 AGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGH------EGGQGTPGFV------GPSGEPGKSGPVGSPGAGGQRGFPG 2698 AG++G G G SGPAG+RGP G+ G G G +G GL G PG+ GP GK+G G G DG G +G PG + GP+G+PGK+G G G G RG PG Sbjct: 414 AGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPG 523 HSP 5 Score: 56.9954 bits (136), Expect = 1.010e-6 Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDG------HEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G GK G+ G++GP+G GP G +GP G G G G +G PG+ GP G GL G G G H G QG PG VGP+G G +GP G G G+ G PG +G Sbjct: 970 GPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVG 1075 HSP 6 Score: 56.9954 bits (136), Expect = 1.010e-6 Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = -3 Query: 2396 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDG------HEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2695 G GK G+ G++GP+G GP G +GP G G G G +G PG+ GP G GL G G G H G QG PG VGP+G G +GP G G G+ G PG +G Sbjct: 970 GPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVG 1075 HSP 7 Score: 54.299 bits (129), Expect = 7.363e-6 Identity = 49/114 (42.98%), Postives = 61/114 (53.51%), Query Frame = 3 Query: 5460 LAGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQ------------GLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G G+ G+ G++GPAG RGP GP G G+ G PG G PG+ G VG Q G G +G++G +G +G PG G GEPG G G+PG G RG PGE G Sbjct: 113 FQGPAGEPGEPGQTGPAGARGP---AGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERG 223 HSP 8 Score: 54.299 bits (129), Expect = 7.363e-6 Identity = 49/114 (42.98%), Postives = 61/114 (53.51%), Query Frame = -3 Query: 2396 LAGILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQ------------GLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2701 G G+ G+ G++GPAG RGP GP G G+ G PG G PG+ G VG Q G G +G++G +G +G PG G GEPG G G+PG G RG PGE G Sbjct: 113 FQGPAGEPGEPGQTGPAGARGP---AGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERG 223
BLAST of collagen vs. RefSeq Human
Match: gi|111118974|ref|NP_149162.2| (collagen alpha-1(II) chain isoform 2 precursor [Homo sapiens]) HSP 1 Score: 137.887 bits (346), Expect = 2.544e-31 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 1167 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1417 HSP 2 Score: 137.887 bits (346), Expect = 2.544e-31 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = -3 Query: 92 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 796 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 1167 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1417
BLAST of collagen vs. RefSeq Human
Match: gi|111118976|ref|NP_001835.3| (collagen alpha-1(II) chain isoform 1 precursor [Homo sapiens]) HSP 1 Score: 135.576 bits (340), Expect = 1.215e-30 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 1236 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1486 HSP 2 Score: 135.576 bits (340), Expect = 1.215e-30 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = -3 Query: 92 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 796 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 1236 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1486
BLAST of collagen vs. RefSeq Human
Match: gi|767973253|ref|XP_011536237.1| (PREDICTED: collagen alpha-1(II) chain isoform X3 [Homo sapiens]) HSP 1 Score: 135.576 bits (340), Expect = 1.262e-30 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 932 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1182 HSP 2 Score: 135.576 bits (340), Expect = 1.262e-30 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = -3 Query: 92 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 796 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 932 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1182
BLAST of collagen vs. RefSeq Human
Match: gi|767973251|ref|XP_011536236.1| (PREDICTED: collagen alpha-1(II) chain isoform X2 [Homo sapiens]) HSP 1 Score: 135.576 bits (340), Expect = 1.571e-30 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 3 Query: 7365 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 8069 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 1283 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1533 HSP 2 Score: 135.576 bits (340), Expect = 1.571e-30 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = -3 Query: 92 VMAMQMRSPTKGIMYGDDSMTAKLLGGN----VIKNPQGTKDVPAKTCKHLSVSNPNKPDGEYWIDPNSGRIDDAVKVFCKISKQQTCIKPIDGDIAIKKWHTTNF--NGHSW--------IHTLTKKNEVKYSIPNSQLSFLKAYSEKAIQRVTFTCDNHPIIGNDGKINKVTSPRLLADDDSILRIN-HPKLKYTVITDDCQYGKSSEAETVIEV-SNDANIFPIRDVGVTIISKNDSQFGLKFEEVCF 796 + M+ G+ D + A L N I++P+G++ PA+TC+ L + +P G+YWIDPN G DA+KVFC + +TC+ P ++ K W ++ H W H + + + N Q++FL+ S + Q +T+ C N ++ N + + +D +R + + YT + D C +TVIE S + PI D+ I + +FG+ VCF Sbjct: 1283 LQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1533
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|386765914|ref|NP_001247142.1| (CG42342, isoform K [Drosophila melanogaster]) HSP 1 Score: 53.9138 bits (128), Expect = 2.412e-6 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 3 Query: 5484 GDLGKSGPAGIRGPPGELGPAGGKGKIGSPG---LRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G G+ G G +G PGE G G +G +G PG +RG G +GP GK G+ G +G GH+G +G PG G G PG+ GP G G+ G G PG+ G Sbjct: 610 GSQGERGLDGRKGDPGEKGHKGDQGPMGLPGPMGMRGESGPSGPSGKAGIPGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRG 706 HSP 2 Score: 53.9138 bits (128), Expect = 2.412e-6 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -3 Query: 2396 GDLGKSGPAGIRGPPGELGPAGGKGKIGSPG---LRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2677 G G+ G G +G PGE G G +G +G PG +RG G +GP GK G+ G +G GH+G +G PG G G PG+ GP G G+ G G PG+ G Sbjct: 610 GSQGERGLDGRKGDPGEKGHKGDQGPMGLPGPMGMRGESGPSGPSGKAGIPGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRG 706
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|24581820|ref|NP_723044.1| (collagen type IV, isoform A [Drosophila melanogaster]) HSP 1 Score: 53.9138 bits (128), Expect = 2.535e-6 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 5768 GI+G+ GD+G GPAG+ GPPG G G +G+ G+ G G PG G G +G G GNDG +G F G +G PGK GP G PG G +G G G+ Sbjct: 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG------FAGVTGAPGKRGPAGIPGVSGAKGDKGATGL 999 HSP 2 Score: 53.9138 bits (128), Expect = 2.535e-6 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = -3 Query: 2393 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 2695 GI+G+ GD+G GPAG+ GPPG G G +G+ G+ G G PG G G +G G GNDG +G F G +G PGK GP G PG G +G G G+ Sbjct: 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG------FAGVTGAPGKRGPAGIPGVSGAKGDKGATGL 999
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|24581822|ref|NP_723045.1| (collagen type IV, isoform B [Drosophila melanogaster]) HSP 1 Score: 53.9138 bits (128), Expect = 2.535e-6 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 5768 GI+G+ GD+G GPAG+ GPPG G G +G+ G+ G G PG G G +G G GNDG +G F G +G PGK GP G PG G +G G G+ Sbjct: 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG------FAGVTGAPGKRGPAGIPGVSGAKGDKGATGL 999 HSP 2 Score: 53.9138 bits (128), Expect = 2.535e-6 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = -3 Query: 2393 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 2695 GI+G+ GD+G GPAG+ GPPG G G +G+ G+ G G PG G G +G G GNDG +G F G +G PGK GP G PG G +G G G+ Sbjct: 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG------FAGVTGAPGKRGPAGIPGVSGAKGDKGATGL 999
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|24581824|ref|NP_723046.1| (collagen type IV, isoform C [Drosophila melanogaster]) HSP 1 Score: 53.9138 bits (128), Expect = 2.535e-6 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 5466 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 5768 GI+G+ GD+G GPAG+ GPPG G G +G+ G+ G G PG G G +G G GNDG +G F G +G PGK GP G PG G +G G G+ Sbjct: 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG------FAGVTGAPGKRGPAGIPGVSGAKGDKGATGL 999 HSP 2 Score: 53.9138 bits (128), Expect = 2.535e-6 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = -3 Query: 2393 GILGKDGDLGKSGPAGIRGPPGELGPAGGKGKIGSPGLRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELGV 2695 GI+G+ GD+G GPAG+ GPPG G G +G+ G+ G G PG G G +G G GNDG +G F G +G PGK GP G PG G +G G G+ Sbjct: 905 GIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG------FAGVTGAPGKRGPAGIPGVSGAKGDKGATGL 999
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|221379525|ref|NP_001138061.1| (CG42342, isoform D [Drosophila melanogaster]) HSP 1 Score: 53.9138 bits (128), Expect = 2.607e-6 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 3 Query: 5484 GDLGKSGPAGIRGPPGELGPAGGKGKIGSPG---LRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 5765 G G+ G G +G PGE G G +G +G PG +RG G +GP GK G+ G +G GH+G +G PG G G PG+ GP G G+ G G PG+ G Sbjct: 633 GSQGERGLDGRKGDPGEKGHKGDQGPMGLPGPMGMRGESGPSGPSGKAGIPGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRG 729 HSP 2 Score: 53.9138 bits (128), Expect = 2.607e-6 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -3 Query: 2396 GDLGKSGPAGIRGPPGELGPAGGKGKIGSPG---LRGIPGDTGPVGKQGLAGQKGNDGHEGGQGTPGFVGPSGEPGKSGPVGSPGAGGQRGFPGELG 2677 G G+ G G +G PGE G G +G +G PG +RG G +GP GK G+ G +G GH+G +G PG G G PG+ GP G G+ G G PG+ G Sbjct: 633 GSQGERGLDGRKGDPGEKGHKGDQGPMGLPGPMGMRGESGPSGPSGKAGIPGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRG 729 The following BLAST results are available for this feature:
BLAST of collagen vs. uniprot
Analysis Date: 2016-03-08 (Phagocata morgani BLASTX Swissprot Uniprot) Total hits: 5
BLAST of collagen vs. Smed Unigenes AA
Analysis Date: 2016-03-09 (Phagocata morgani BLASTX Schmidtea mediterranea) Total hits: 5
BLAST of collagen vs. RefSeq Human
Analysis Date: 2016-03-09 (Phagocata morgani BLASTX Human) Total hits: 5
BLAST of collagen vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-09 (Phagocata morgani BLASTX Drosophila melanogaster) Total hits: 5
Sequences
The following sequences are available for this feature:
mRNA sequence >Pmo_027332 ID=Pmo_027332|Name=collagen|organism=Phagocata morgani|type=mRNA|length=8160bp Design Primers for collagen back to top protein sequence >Pmo_027332-protein ID=Pmo_027332-protein|Name=collagen|organism=Phagocata morgani|type=polypeptide|length=1225bpback to top coding sequence >Pmo_027332.4401.8075 ID=Pmo_027332.4401.8075|Name=Pmo_027332.4401.8075|organism=Phagocata morgani|type=CDS|length=3675bpback to top Gene Groups
collagen is similar in sequence to the genes of this group: GG1008
Gene Group Protein Sequences >SMU15002271 |