Pmo_015562, Pmo_015562 (mRNA) Phagocata morgani

Overview
NamePmo_015562
Unique NamePmo_015562
TypemRNA
OrganismPhagocata morgani (P. morgani)
Sequence length1728
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phagocata morgani Transcriptome2016-03-03
Phagocata morgani BLASTX Schmidtea mediterranea2016-03-09
Phagocata morgani BLASTX Human2016-03-09
Phagocata morgani BLASTX Drosophila melanogaster2016-03-09
Phagocata morgani BLASTX Swissprot Uniprot2016-03-08
Phagocata morgani CDS2016-05-06
Homology
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BLAST of Pmo_015562 vs. Smed Unigenes AA
Match: SMU15000337 (Asxlregen_comp45583_c0_seq1|m.3077|m.30111)

HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0
Identity = 286/521 (54.89%), Postives = 364/521 (69.87%), Query Frame = 1 
Query:  100 FIHSLLVLFEMGFFLKSQLFPLVILLFIIASNVTWAWLPGGVSCKRDHECSSKFCVKTFGRWFCSMESKYGSRRVAGGGFCATDEQCYSGLCLEIXXXXXXXXXXXXXXXVAERGRCRDHKNCFSGVCLPIMKNETMKFCSKDSAVINKVGEGGICTENKQCYCGYCATLKGNTTYCSKDSKVNGKIGGGGPCLRHDQCFSGVCFKYKSKLRCARDSKTMNKVGSGGQCISNDQCFSGYCIPDSMSKKKYCAKSSRHQGLIGGGGQCLTDNSCFSGFCVQLGKIKVCAKDSKTVQRVGGGGSCRRSKECFSGYCVKGTGQKIGYCSQDSPLFKLIGAGGPCKNNNQCFSFYCYKVSKKLKVCAQDSVYRGKVGGGGPCKSDIYCASGHCIKNESGLRFCVQESNRKLGFIREGGRCNIHHACYSGYCIKADNNSFCAKESERMGKIGEGGPCLKDWQCYSRYCYSNGNQKYCATNGDEYGSVGLNGPCRRNTDCSSRRCVEMKLKTPINDATKIKLCLKRK 1662
            FI     L  M  +L   +F     ++ I         PGG  C+++ +C+SKFCVK   RWFC+ +S+ G  ++AGGG C  D+QC+SG+CL +G  KFCSK++K + KVAERGRCR+  NCFSG C P+  N TMKFC+KDS +  K+G GGIC  + QC+ G+C  + G T +CSKDS+  G +G GGPC    QCFSGVCFK++ ++ CAR+SK    VGSGG+CI ++QCFS +C+ D + K K+CAK SR+  L+GGGGQCL D  CFSG CV LG ++VCAKDSK    VGGGG+CRR  ECFSG CVK    KIG+CS+DS +FK IG GG C+NN QCFS YC+KV  K K+CA+DS +RGKV GGGPC SD YCAS  C  N +G ++CVQES++K G+I EGG C  HH CYSGYC+K    SFCAKES+++ KIG GGPC++DWQC+SRYCY NG  KYCA +G  +G VG++GPCRRN DCSS RCV MK K+       +K+C   K
Sbjct:   26 FIQLHHQLIVMNSYLLWIIFTAAFSIYYI-HRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDN-NGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRYCYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEGTVKVCQNSK 544
The following BLAST results are available for this feature:
BLAST of Pmo_015562 vs. uniprot
Analysis Date: 2016-03-08 (Phagocata morgani BLASTX Swissprot Uniprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmo_015562 vs. Smed Unigenes AA
Analysis Date: 2016-03-09 (Phagocata morgani BLASTX Schmidtea mediterranea)
Total hits: 1
Match NameE-valueIdentityDescription
SMU150003370.000e+054.89Asxlregen_comp45583_c0_seq1|m.3077|m.30111[more]
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BLAST of Pmo_015562 vs. RefSeq Human
Analysis Date: 2016-03-09 (Phagocata morgani BLASTX Human)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmo_015562 vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-09 (Phagocata morgani BLASTX Drosophila melanogaster)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Pmo_015562 ID=Pmo_015562|Name=Pmo_015562|organism=Phagocata morgani|type=mRNA|length=1728bp
GCAAAGATGCCGCCACCAAAGCAAAGCGACTCCAAGACGAAGATCGATCC
AAAGACTACGAAGAAGAAGTGAGAGAGGCTGCTTCCACCCATTCATTCAT
TCATTCATTCATTATTAGTACTATTTGAAATGGGATTCTTTTTGAAATCA
CAGCTTTTTCCGTTGGTGATTCTTTTGTTTATAATTGCATCCAACGTCAC
ATGGGCATGGTTACCAGGAGGGGTGTCATGCAAACGTGATCACGAATGTT
CTTCTAAGTTTTGCGTAAAAACCTTCGGCCGATGGTTCTGCTCCATGGAA
TCGAAATACGGCAGTAGGCGGGTGGCTGGAGGTGGTTTTTGTGCCACGGA
TGAACAGTGTTACTCGGGGCTTTGTCTTGAAATCGGAAAGAAGAAATTCT
GCTCAAAGGATTCGAAGAAAGAAGGAAAGGTTGCAGAAAGAGGACGGTGT
AGAGACCACAAAAACTGTTTTTCCGGTGTATGCCTCCCGATTATGAAGAA
TGAAACGATGAAATTTTGCTCCAAAGATTCCGCAGTCATCAACAAAGTCG
GCGAGGGCGGTATTTGTACTGAGAATAAGCAGTGCTACTGCGGGTATTGC
GCGACTTTAAAGGGTAACACAACATATTGCAGTAAGGATTCCAAAGTAAA
TGGGAAGATTGGAGGCGGAGGTCCGTGTTTAAGACACGATCAATGTTTTT
CAGGCGTATGTTTCAAGTACAAGAGCAAACTTCGGTGTGCACGTGACTCA
AAGACCATGAACAAAGTAGGCAGCGGAGGTCAATGCATAAGCAACGACCA
GTGCTTCTCTGGATACTGTATTCCAGACTCAATGTCAAAGAAAAAGTATT
GCGCCAAATCTTCACGGCACCAAGGACTTATTGGAGGAGGTGGTCAATGT
TTAACTGACAATTCGTGCTTTTCGGGATTCTGCGTTCAACTCGGCAAAAT
AAAAGTATGTGCAAAAGACTCAAAGACTGTCCAAAGAGTTGGAGGCGGAG
GATCATGTCGACGTAGTAAAGAATGCTTCTCTGGATACTGTGTCAAGGGA
ACCGGGCAGAAAATTGGTTATTGCTCCCAAGATTCTCCGCTCTTCAAATT
AATTGGAGCCGGCGGTCCGTGTAAGAATAACAATCAGTGCTTCTCGTTCT
ACTGTTACAAGGTGAGCAAGAAACTGAAGGTGTGTGCTCAAGACTCGGTG
TACCGGGGCAAAGTAGGCGGCGGAGGGCCGTGCAAGAGCGATATTTATTG
TGCATCGGGCCACTGCATTAAAAATGAATCCGGGCTTAGATTCTGTGTCC
AAGAATCGAATAGAAAACTCGGATTCATCAGAGAAGGAGGAAGATGCAAC
ATTCACCATGCATGTTATTCAGGATATTGTATCAAGGCCGACAACAATAG
CTTCTGCGCTAAAGAGTCAGAGAGAATGGGAAAGATCGGAGAGGGCGGTC
CATGCCTGAAAGACTGGCAATGCTACTCTCGTTATTGCTATAGCAACGGA
AACCAGAAATATTGTGCCACGAATGGAGATGAATACGGCTCCGTGGGACT
GAACGGTCCCTGTCGACGAAACACGGACTGTAGTTCACGACGGTGTGTGG
AAATGAAACTGAAAACTCCGATCAATGATGCAACCAAAATTAAACTTTGT
TTAAAAAGAAAACCCCTAATTTGAACAATACTTTTGACGATTTTGAATAA
ATATTTTAAAATGCATTGAATAAAAAAA

Design Primers for Pmo_015562

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protein sequence

>Pmo_015562-protein ID=Pmo_015562-protein|Name=Pmo_015562|organism=Phagocata morgani|type=polypeptide|length=515bp

MGFFLKSQLFPLVILLFIIASNVTWAWLPGGVSCKRDHECSSKFCVKTFG
RWFCSMESKYGSRRVAGGGFCATDEQCYSGLCLEIGKKKFCSKDSKKEGK
VAERGRCRDHKNCFSGVCLPIMKNETMKFCSKDSAVINKVGEGGICTENK
QCYCGYCATLKGNTTYCSKDSKVNGKIGGGGPCLRHDQCFSGVCFKYKSK
LRCARDSKTMNKVGSGGQCISNDQCFSGYCIPDSMSKKKYCAKSSRHQGL
IGGGGQCLTDNSCFSGFCVQLGKIKVCAKDSKTVQRVGGGGSCRRSKECF
SGYCVKGTGQKIGYCSQDSPLFKLIGAGGPCKNNNQCFSFYCYKVSKKLK
VCAQDSVYRGKVGGGGPCKSDIYCASGHCIKNESGLRFCVQESNRKLGFI
REGGRCNIHHACYSGYCIKADNNSFCAKESERMGKIGEGGPCLKDWQCYS
RYCYSNGNQKYCATNGDEYGSVGLNGPCRRNTDCSSRRCVEMKLKTPIND
ATKIKLCLKRKPLI*
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coding sequence

>Pmo_015562.130.1674 ID=Pmo_015562.130.1674|Name=Pmo_015562.130.1674|organism=Phagocata morgani|type=CDS|length=1545bp
ATGGGATTCTTTTTGAAATCACAGCTTTTTCCGTTGGTGATTCTTTTGTT
TATAATTGCATCCAACGTCACATGGGCATGGTTACCAGGAGGGGTGTCAT
GCAAACGTGATCACGAATGTTCTTCTAAGTTTTGCGTAAAAACCTTCGGC
CGATGGTTCTGCTCCATGGAATCGAAATACGGCAGTAGGCGGGTGGCTGG
AGGTGGTTTTTGTGCCACGGATGAACAGTGTTACTCGGGGCTTTGTCTTG
AAATCGGAAAGAAGAAATTCTGCTCAAAGGATTCGAAGAAAGAAGGAAAG
GTTGCAGAAAGAGGACGGTGTAGAGACCACAAAAACTGTTTTTCCGGTGT
ATGCCTCCCGATTATGAAGAATGAAACGATGAAATTTTGCTCCAAAGATT
CCGCAGTCATCAACAAAGTCGGCGAGGGCGGTATTTGTACTGAGAATAAG
CAGTGCTACTGCGGGTATTGCGCGACTTTAAAGGGTAACACAACATATTG
CAGTAAGGATTCCAAAGTAAATGGGAAGATTGGAGGCGGAGGTCCGTGTT
TAAGACACGATCAATGTTTTTCAGGCGTATGTTTCAAGTACAAGAGCAAA
CTTCGGTGTGCACGTGACTCAAAGACCATGAACAAAGTAGGCAGCGGAGG
TCAATGCATAAGCAACGACCAGTGCTTCTCTGGATACTGTATTCCAGACT
CAATGTCAAAGAAAAAGTATTGCGCCAAATCTTCACGGCACCAAGGACTT
ATTGGAGGAGGTGGTCAATGTTTAACTGACAATTCGTGCTTTTCGGGATT
CTGCGTTCAACTCGGCAAAATAAAAGTATGTGCAAAAGACTCAAAGACTG
TCCAAAGAGTTGGAGGCGGAGGATCATGTCGACGTAGTAAAGAATGCTTC
TCTGGATACTGTGTCAAGGGAACCGGGCAGAAAATTGGTTATTGCTCCCA
AGATTCTCCGCTCTTCAAATTAATTGGAGCCGGCGGTCCGTGTAAGAATA
ACAATCAGTGCTTCTCGTTCTACTGTTACAAGGTGAGCAAGAAACTGAAG
GTGTGTGCTCAAGACTCGGTGTACCGGGGCAAAGTAGGCGGCGGAGGGCC
GTGCAAGAGCGATATTTATTGTGCATCGGGCCACTGCATTAAAAATGAAT
CCGGGCTTAGATTCTGTGTCCAAGAATCGAATAGAAAACTCGGATTCATC
AGAGAAGGAGGAAGATGCAACATTCACCATGCATGTTATTCAGGATATTG
TATCAAGGCCGACAACAATAGCTTCTGCGCTAAAGAGTCAGAGAGAATGG
GAAAGATCGGAGAGGGCGGTCCATGCCTGAAAGACTGGCAATGCTACTCT
CGTTATTGCTATAGCAACGGAAACCAGAAATATTGTGCCACGAATGGAGA
TGAATACGGCTCCGTGGGACTGAACGGTCCCTGTCGACGAAACACGGACT
GTAGTTCACGACGGTGTGTGGAAATGAAACTGAAAACTCCGATCAATGAT
GCAACCAAAATTAAACTTTGTTTAAAAAGAAAACCCCTAATTTGA
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Gene Groups
Pmo_015562 is similar in sequence to the genes of this group: GG2694
Gene NameGene ID
SMU15000337SMU15000337
Ddo_006968Ddo_006968
Gsp_004346Gsp_004346
Pgr_000233Pgr_000233
Pgr_004696Pgr_004696
Pmo_015562Pmo_015562
tnxbPmo_024144

Gene Group Protein Sequences

>SMU15000337

LKTSFVQVQSLDQKSKISSRISFVIFIQLHHQLIVMNSYLLWIIFTAAFS
IYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIA
GGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSG
FCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRH
CSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSG
GRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSG
VCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCS
KDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGG
PCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYC
VKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRYCYFNGKLKYCAKDGQ
RFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEGTVKVCQNSKKQKNPL
YNTI*

>Ddo_006968 Ddo_006968

KSIDNLSNLILFSTFIFIMNTYLTILLFGCLLNFCIYQTSGILLPGGYRC
KSDSDCASAFCVQAKIRWYCAPNSRNGRKSIAEGGICEKDDQCFSGVCLE
MGKFKFCSKESKIRNKVAERGRCREDSNCFSGFCVPIRPDSDMKFCAKDS
LVKDKVGSGGICKTDDQCYCGYCVQVAGMTKHCSQDSRVINKIGQGGPCK
SDDQCFSGVCFKHRGQKVCAKESKKMNLVGSGGRCYKNGQCFSNYCILDP
IRKIKFCAKSSRYKNFVGGGGQCTEDKMCFSGVCAKLGSMKVCAKDSKFQ
SQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLLIGGGGICRNI
QQCFSRYCYVVDGKTKICAKDSKFRGKVGGGGPCKTDNHCASNFCHNLNG
KKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEK
IGGGGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVSGPCRKNKDCS
SGRCVSMKSKLADGTESRVKVCQNSKKKKENPFKN*

>Gsp_004346 Gsp_004346

MSSYFVTLFLAVTACLYLHVTVAVVRPGGFRCQRDYECASKFCVKSTKRW
FCSPQSRNRRGTIAGGGICEKDDQCFSGVCLSMGNLKFCSKETKVQKKVA
ERGRCREDSNCFSGYCIPIKPNSEMKFCAKDSLLAGFIGSGGICNEDKQC
NSGYCVQVAGTTKHCSKDSRRQGLIGQGGPCLKDSQCFSGVCFKYRGQNV
CARESKKPGFVGSGGRCKKNEQCFSNYCVEDKITKKKFCAKASRYQKLVG
GGGQCTEDKMCFSGVCVLLGNMQVCAKDSKSSNLVGGGGACRRHVECFSG
LCVKRDNGKVGFCSKDSSVIKLIGGGGICKNNGQCFSRYCYKVDAETKIC
AKDSKFKGKVGGGGPCKNDFFCASNLCHELNGVKYCVQESKQKVGYIGEG
SLCKSHHSCYSGYCVKVGNEGFCAKESLKSEKVGGGGPCVRDWQCYSRYC
FTNGKLKYCAKDGKQFGEVGISGPCRRNKDCSSGRCVSMKTKLADGTESK
VKVCQNPKKKDNPLYNYN*

>Pgr_000233 Pgr_000233

MLYSIKLLSPLTIILVLVHCQINYAWLPGGVSCKRDLECASKYCVKSIGR
WFCSKESKYGKRRVAGGGFCLSDEQCYSGVCLGVGKYFFCSKESKREGRV
AERGRCKEHKNCFSGVCMAIKINSTMKFCAKDSKEVGRVGGGGKCYADNQ
CFSGYCSVWKKNKKHCSKDSVKKGKIGGGGPCLKDLQCFSGVCFKYKNSM
RCASDSSKIGKVGSGGSCSSGSQCFSGHCIRDKVTNRNYCAKTSRHMGLI
GGGGQCLEDKMCFSGFCVQLGSIRVCAKDSKTVQRVGGGGSCRWNDECFS
GFCVRNKGKKVGYCSQDSQLFMLIGGGGPCLNNAQCYSFYCYKVDRKLRV
CAKDSYFRGKVGGGGPCKDDGYCASGYCVKTDKKALTGYCVQESKTKLGF
VAEGGACIVHHSCYSGYCAKVNNVSFCAKESKRLGKVGGGGPCQKDWQCF
SRYCYQNGNVKYCAKDGDKYGSVALGGPCRQNGDCGNVNRCVLMNVKVAN
SLDTKIKVCAKKRRMI*

>Pgr_004696 Pgr_004696

MFGSSKSLLILTTLCLVVSWHVTMAKLPGGMACKNDEQCKSRFCVKSLSR
WFCSKESTFGRQMIAGGGFCVNNDQCFSGLCLEMGKFKFCAKESRMRGKI
AERGRCLQHENCFSGSCLSINDNSTMKFCSKDSNVVGKIGEGGICTENDQ
CHSGYCVMLGDKKMYCSKDSRQQGRIGQGGPCLMNSQCYSGVCFKYKNKM
RCARESRKIDKVGSGGSCHNNSQCFSNYCIADKVSRRQFCAKVSRSEGLV
GGGGQCYNDKMCYSGYCVKLGNLMACAKDSIKKMKVGGGGPCRKNDGCFS
GYCVKNAGAKFGYCSKDSPEYNFVGGGGPCTSHVQCYSKYCHSLNDKLKV
CAKDSIYKGKVGGGGPCQNDFHCASTLCLRKIIAGPVRFCVQESSSRLGF
VAEGGICEDNRNCNSGYCVKQRTNSFCAKESKRDGKIGGGGPCYNDSQCF
SGYCYSNQGVKYCAKDGRKYRKVGISGPCRINADCSSKRCVKMIVYGVND
KMKEKVCLEKKKGTSKKDVI*

>Pmo_015562 Pmo_015562

MGFFLKSQLFPLVILLFIIASNVTWAWLPGGVSCKRDHECSSKFCVKTFG
RWFCSMESKYGSRRVAGGGFCATDEQCYSGLCLEIGKKKFCSKDSKKEGK
VAERGRCRDHKNCFSGVCLPIMKNETMKFCSKDSAVINKVGEGGICTENK
QCYCGYCATLKGNTTYCSKDSKVNGKIGGGGPCLRHDQCFSGVCFKYKSK
LRCARDSKTMNKVGSGGQCISNDQCFSGYCIPDSMSKKKYCAKSSRHQGL
IGGGGQCLTDNSCFSGFCVQLGKIKVCAKDSKTVQRVGGGGSCRRSKECF
SGYCVKGTGQKIGYCSQDSPLFKLIGAGGPCKNNNQCFSFYCYKVSKKLK
VCAQDSVYRGKVGGGGPCKSDIYCASGHCIKNESGLRFCVQESNRKLGFI
REGGRCNIHHACYSGYCIKADNNSFCAKESERMGKIGEGGPCLKDWQCYS
RYCYSNGNQKYCATNGDEYGSVGLNGPCRRNTDCSSRRCVEMKLKTPIND
ATKIKLCLKRKPLI*

>Pmo_024144 tnxb

HYHLLFTMLLVIRLLHSFVVLFILLQWHSTIAKLYGGMACKLNGQCMSGL
CVKSLNRWFCSKESKYDKSKIAGGGFCMEDWQCFSSLCLQMGTFKFCAKE
SRRQGRVAERGRCREHNNCFSGSCLAINSNSTMKFCSKDSNVIGRVGEGG
LCTLDKQCHSGYCALLEDKKMYCSKDSRAVDKIGQGGPCLIDSQCYSGVC
FKFKGKLRCARESKEINKVGSGGSCLKRQQCFSNYCVVDKVSKRQFCAKV
SRLQGLVGGGGQCKRDDMCFSGFCVKLGNINVCAKDSSKRNKIGGGGPCR
RPDECFSGHCVKKSRAKMGFCSKDAPTFNHIGGGGPCKFHAQCYSLYCHK
LNNKTKACAKDSFYPGKVGGGGPCRDDFDCASNYCYQARGVKFCVQESKS
KLGFIAEGGLCMIHRSCNSGFCVKNNSTGFCAKESRMDGKIGGGGPCKMD
YQCFSGYCFNNGSMMYCAKDGHKYNRVGISGPCRKNSECSSKRCVEMNLK
TAINNSTKAKVCLEKKKHSTKKGNTIK*

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