Pgr_004696, Pgr_004696 (mRNA) Phagocata gracilis

Overview
NamePgr_004696
Unique NamePgr_004696
TypemRNA
OrganismPhagocata gracilis (P. gracilis)
Sequence length1652
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phagocata gracilis Transcriptome2016-04-28
Phagocata gracilis BLASTX Human2016-03-08
Phagocata gracilis BLASTX Schmidtea mediterranea2016-03-08
Phagocata gracilis BLASTX Swissprot Uniprot2016-03-08
Phagocata gracilis BLASTX Drosophila melanogaster2016-03-09
Phagocata gracilis CDS2016-05-06
Homology
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BLAST of Pgr_004696 vs. Smed Unigenes AA
Match: SMU15000337 (Asxlregen_comp45583_c0_seq1|m.3077|m.30111)

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 281/516 (54.46%), Postives = 361/516 (69.96%), Query Frame = 1 
Query:    4 TKVTVVH*LVDHLSLFMFGSSKSLLILTTLCLVVSWHVTMAKL-PGGMACKNDEQCKSRFCVKSLSRWFCSKESTFGRQMIAGGGFCVNNDQCFSGLCLEMGKFKFCAKESRMRGKIAERGRCLQHENCFSGSCLSINDNSTMKFCSKDSNVVGKIGEGGICTENDQCHSGYCVMLGDKKMYCSKDSRQQGRIGQGGPCLMNSQCYSGVCFKYKNKMRCARESRKIDKVGSGGSCHNNSQCFSNYCIADKVSRRQFCAKVSRSEGLVGGGGQCYNDKMCYSGYCVKLGNLMACAKDSIKKMKVGGGGPCRKNDGCFSGYCVKNAGAKFGYCSKDSPEYNFVGGGGPCTSHVQCYSKYCHSLNDKLKVCAKDSIYKGKVGGGGPCQNDFHCASTLCLRKIIAGPVRFCVQESSSRLGFVAEGGICEDNRNCNSGYCVKQRTNSFCAKESKRDGKIGGGGPCYNDSQCFSGYCYSNQGVKYCAKDGRKYRKVGISGPCRINADCSSKRCVKMIVYGVN 1548
            ++++ V  +  H  L +  S    +I T    +   H T A + PGG  C+ +E C S+FCVK   RWFC+ +S  GR  IAGGG C  +DQCFSG+CL MG FKFC+KE++++ K+AERGRC +  NCFSG C  +  NSTMKFC+KDS + GKIG GGIC  ++QCHSG+CV +     +CSKDSR+ G +GQGGPC  ++QC+SGVCFK++ +M CARES+K   VGSGG C  + QCFSN+C+ D++ + +FCAKVSR+  LVGGGGQC +DKMC+SG CV LG +  CAKDS     VGGGG CR++  CFSG CVK    K G+CSKDS  +  +GGGG C ++ QC+S+YCH ++ K K+CAKDS ++GKV GGGPC +DF+CAS  C         ++CVQESS + G++AEGG C ++  C SGYCVK    SFCAKESK+  KIGGGGPC  D QCFS YCY N  +KYCAKDG+++ +VGISGPCR N DCSS RCV M    VN
Sbjct:   19 SRISFVIFIQLHHQLIVMNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDN---NGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRYCYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSVN 531
The following BLAST results are available for this feature:
BLAST of Pgr_004696 vs. RefSeq Human
Analysis Date: 2016-03-08 (Phagocata gracilis BLASTX Human)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pgr_004696 vs. Smed Unigenes AA
Analysis Date: 2016-03-08 (Phagocata gracilis BLASTX Schmidtea mediterranea)
Total hits: 1
Match NameE-valueIdentityDescription
SMU150003370.000e+054.46Asxlregen_comp45583_c0_seq1|m.3077|m.30111[more]
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BLAST of Pgr_004696 vs. uniprot
Analysis Date: 2016-03-08 (Phagocata gracilis BLASTX Swissprot Uniprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pgr_004696 vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-09 (Phagocata gracilis BLASTX Drosophila melanogaster)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Pgr_004696 ID=Pgr_004696|Name=Pgr_004696|organism=Phagocata gracilis|type=mRNA|length=1652bp
TGTACAAAGGTCACGGTAGTACACTGATTGGTTGATCATTTATCATTATT
TATGTTTGGTTCATCAAAATCGTTACTGATTCTCACCACTCTTTGTCTCG
TCGTTTCATGGCATGTTACCATGGCCAAACTGCCTGGTGGGATGGCCTGT
AAGAATGACGAACAATGCAAGTCAAGATTTTGCGTTAAGTCGTTGAGTCG
CTGGTTTTGTTCCAAGGAGTCAACGTTCGGTAGACAAATGATAGCTGGCG
GTGGATTCTGTGTCAATAATGATCAGTGTTTCTCGGGACTTTGTCTGGAG
ATGGGCAAATTCAAGTTCTGTGCCAAGGAGTCGAGGATGCGAGGCAAGAT
TGCTGAAAGAGGACGTTGCCTGCAGCACGAGAACTGCTTCTCTGGGTCAT
GCTTGTCGATCAATGATAATTCGACGATGAAATTCTGTTCTAAAGACTCC
AATGTCGTAGGCAAGATCGGCGAGGGAGGAATATGCACTGAAAATGATCA
ATGCCACTCTGGATATTGCGTTATGCTCGGTGATAAGAAGATGTACTGTA
GTAAGGACTCTAGACAACAAGGGAGAATCGGCCAAGGAGGGCCTTGCTTG
ATGAACTCTCAATGCTACTCAGGGGTCTGTTTCAAGTACAAGAATAAAAT
GAGATGTGCTAGAGAGTCCAGGAAGATAGACAAAGTCGGCAGCGGAGGTA
GTTGCCACAATAACAGTCAATGTTTCTCCAACTATTGCATTGCTGACAAA
GTGTCACGTAGACAATTCTGTGCTAAGGTCTCTCGCTCCGAGGGTCTCGT
GGGCGGTGGAGGACAATGTTATAACGATAAAATGTGTTACTCCGGATACT
GTGTGAAACTCGGCAACCTGATGGCATGTGCCAAGGACTCTATTAAAAAG
ATGAAGGTTGGTGGCGGAGGACCTTGTCGTAAAAATGATGGTTGTTTCTC
GGGTTATTGTGTGAAGAATGCTGGGGCTAAGTTCGGTTATTGCTCCAAAG
ACTCTCCGGAATATAATTTTGTTGGCGGTGGCGGTCCTTGTACATCACAT
GTGCAATGCTACTCAAAATACTGTCATTCGCTCAATGACAAACTGAAGGT
CTGTGCCAAAGACTCCATTTACAAGGGTAAGGTCGGAGGTGGAGGACCTT
GTCAAAATGATTTCCACTGTGCCTCCACGTTATGCTTGAGGAAAATCATA
GCCGGTCCCGTTAGGTTCTGTGTCCAAGAATCAAGTTCAAGACTCGGATT
CGTTGCGGAAGGAGGCATCTGCGAAGACAACAGGAACTGTAACTCGGGAT
ACTGTGTCAAACAGCGAACAAATAGTTTCTGCGCCAAAGAATCAAAGAGG
GATGGAAAGATTGGTGGAGGAGGACCGTGTTATAATGATTCACAGTGCTT
CTCTGGATATTGTTACAGTAATCAAGGTGTGAAATACTGTGCCAAGGACG
GCCGTAAATATCGCAAGGTCGGAATCAGTGGTCCATGTCGGATAAATGCG
GATTGCAGTTCTAAGAGGTGTGTTAAGATGATTGTCTATGGGGTAAATGA
CAAAATGAAGGAGAAAGTTTGTCTTGAAAAGAAAAAAGGAACTTCCAAAA
AGGATGTGATTTAATAATTTTTGTTTAATATATTAGACCCATTAAAAAAA
AA

Design Primers for Pgr_004696

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protein sequence

>Pgr_004696-protein ID=Pgr_004696-protein|Name=Pgr_004696|organism=Phagocata gracilis|type=polypeptide|length=521bp

MFGSSKSLLILTTLCLVVSWHVTMAKLPGGMACKNDEQCKSRFCVKSLSR
WFCSKESTFGRQMIAGGGFCVNNDQCFSGLCLEMGKFKFCAKESRMRGKI
AERGRCLQHENCFSGSCLSINDNSTMKFCSKDSNVVGKIGEGGICTENDQ
CHSGYCVMLGDKKMYCSKDSRQQGRIGQGGPCLMNSQCYSGVCFKYKNKM
RCARESRKIDKVGSGGSCHNNSQCFSNYCIADKVSRRQFCAKVSRSEGLV
GGGGQCYNDKMCYSGYCVKLGNLMACAKDSIKKMKVGGGGPCRKNDGCFS
GYCVKNAGAKFGYCSKDSPEYNFVGGGGPCTSHVQCYSKYCHSLNDKLKV
CAKDSIYKGKVGGGGPCQNDFHCASTLCLRKIIAGPVRFCVQESSSRLGF
VAEGGICEDNRNCNSGYCVKQRTNSFCAKESKRDGKIGGGGPCYNDSQCF
SGYCYSNQGVKYCAKDGRKYRKVGISGPCRINADCSSKRCVKMIVYGVND
KMKEKVCLEKKKGTSKKDVI*
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coding sequence

>Pgr_004696.52.1614 ID=Pgr_004696.52.1614|Name=Pgr_004696.52.1614|organism=Phagocata gracilis|type=CDS|length=1563bp
ATGTTTGGTTCATCAAAATCGTTACTGATTCTCACCACTCTTTGTCTCGT
CGTTTCATGGCATGTTACCATGGCCAAACTGCCTGGTGGGATGGCCTGTA
AGAATGACGAACAATGCAAGTCAAGATTTTGCGTTAAGTCGTTGAGTCGC
TGGTTTTGTTCCAAGGAGTCAACGTTCGGTAGACAAATGATAGCTGGCGG
TGGATTCTGTGTCAATAATGATCAGTGTTTCTCGGGACTTTGTCTGGAGA
TGGGCAAATTCAAGTTCTGTGCCAAGGAGTCGAGGATGCGAGGCAAGATT
GCTGAAAGAGGACGTTGCCTGCAGCACGAGAACTGCTTCTCTGGGTCATG
CTTGTCGATCAATGATAATTCGACGATGAAATTCTGTTCTAAAGACTCCA
ATGTCGTAGGCAAGATCGGCGAGGGAGGAATATGCACTGAAAATGATCAA
TGCCACTCTGGATATTGCGTTATGCTCGGTGATAAGAAGATGTACTGTAG
TAAGGACTCTAGACAACAAGGGAGAATCGGCCAAGGAGGGCCTTGCTTGA
TGAACTCTCAATGCTACTCAGGGGTCTGTTTCAAGTACAAGAATAAAATG
AGATGTGCTAGAGAGTCCAGGAAGATAGACAAAGTCGGCAGCGGAGGTAG
TTGCCACAATAACAGTCAATGTTTCTCCAACTATTGCATTGCTGACAAAG
TGTCACGTAGACAATTCTGTGCTAAGGTCTCTCGCTCCGAGGGTCTCGTG
GGCGGTGGAGGACAATGTTATAACGATAAAATGTGTTACTCCGGATACTG
TGTGAAACTCGGCAACCTGATGGCATGTGCCAAGGACTCTATTAAAAAGA
TGAAGGTTGGTGGCGGAGGACCTTGTCGTAAAAATGATGGTTGTTTCTCG
GGTTATTGTGTGAAGAATGCTGGGGCTAAGTTCGGTTATTGCTCCAAAGA
CTCTCCGGAATATAATTTTGTTGGCGGTGGCGGTCCTTGTACATCACATG
TGCAATGCTACTCAAAATACTGTCATTCGCTCAATGACAAACTGAAGGTC
TGTGCCAAAGACTCCATTTACAAGGGTAAGGTCGGAGGTGGAGGACCTTG
TCAAAATGATTTCCACTGTGCCTCCACGTTATGCTTGAGGAAAATCATAG
CCGGTCCCGTTAGGTTCTGTGTCCAAGAATCAAGTTCAAGACTCGGATTC
GTTGCGGAAGGAGGCATCTGCGAAGACAACAGGAACTGTAACTCGGGATA
CTGTGTCAAACAGCGAACAAATAGTTTCTGCGCCAAAGAATCAAAGAGGG
ATGGAAAGATTGGTGGAGGAGGACCGTGTTATAATGATTCACAGTGCTTC
TCTGGATATTGTTACAGTAATCAAGGTGTGAAATACTGTGCCAAGGACGG
CCGTAAATATCGCAAGGTCGGAATCAGTGGTCCATGTCGGATAAATGCGG
ATTGCAGTTCTAAGAGGTGTGTTAAGATGATTGTCTATGGGGTAAATGAC
AAAATGAAGGAGAAAGTTTGTCTTGAAAAGAAAAAAGGAACTTCCAAAAA
GGATGTGATTTAA
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Gene Groups
Pgr_004696 is similar in sequence to the genes of this group: GG2694
Gene NameGene ID
SMU15000337SMU15000337
Ddo_006968Ddo_006968
Gsp_004346Gsp_004346
Pgr_000233Pgr_000233
Pgr_004696Pgr_004696
Pmo_015562Pmo_015562
tnxbPmo_024144

Gene Group Protein Sequences

>SMU15000337

LKTSFVQVQSLDQKSKISSRISFVIFIQLHHQLIVMNSYLLWIIFTAAFS
IYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIA
GGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSG
FCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRH
CSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSG
GRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSG
VCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCS
KDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGG
PCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYC
VKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRYCYFNGKLKYCAKDGQ
RFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEGTVKVCQNSKKQKNPL
YNTI*

>Ddo_006968 Ddo_006968

KSIDNLSNLILFSTFIFIMNTYLTILLFGCLLNFCIYQTSGILLPGGYRC
KSDSDCASAFCVQAKIRWYCAPNSRNGRKSIAEGGICEKDDQCFSGVCLE
MGKFKFCSKESKIRNKVAERGRCREDSNCFSGFCVPIRPDSDMKFCAKDS
LVKDKVGSGGICKTDDQCYCGYCVQVAGMTKHCSQDSRVINKIGQGGPCK
SDDQCFSGVCFKHRGQKVCAKESKKMNLVGSGGRCYKNGQCFSNYCILDP
IRKIKFCAKSSRYKNFVGGGGQCTEDKMCFSGVCAKLGSMKVCAKDSKFQ
SQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLLIGGGGICRNI
QQCFSRYCYVVDGKTKICAKDSKFRGKVGGGGPCKTDNHCASNFCHNLNG
KKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEK
IGGGGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVSGPCRKNKDCS
SGRCVSMKSKLADGTESRVKVCQNSKKKKENPFKN*

>Gsp_004346 Gsp_004346

MSSYFVTLFLAVTACLYLHVTVAVVRPGGFRCQRDYECASKFCVKSTKRW
FCSPQSRNRRGTIAGGGICEKDDQCFSGVCLSMGNLKFCSKETKVQKKVA
ERGRCREDSNCFSGYCIPIKPNSEMKFCAKDSLLAGFIGSGGICNEDKQC
NSGYCVQVAGTTKHCSKDSRRQGLIGQGGPCLKDSQCFSGVCFKYRGQNV
CARESKKPGFVGSGGRCKKNEQCFSNYCVEDKITKKKFCAKASRYQKLVG
GGGQCTEDKMCFSGVCVLLGNMQVCAKDSKSSNLVGGGGACRRHVECFSG
LCVKRDNGKVGFCSKDSSVIKLIGGGGICKNNGQCFSRYCYKVDAETKIC
AKDSKFKGKVGGGGPCKNDFFCASNLCHELNGVKYCVQESKQKVGYIGEG
SLCKSHHSCYSGYCVKVGNEGFCAKESLKSEKVGGGGPCVRDWQCYSRYC
FTNGKLKYCAKDGKQFGEVGISGPCRRNKDCSSGRCVSMKTKLADGTESK
VKVCQNPKKKDNPLYNYN*

>Pgr_000233 Pgr_000233

MLYSIKLLSPLTIILVLVHCQINYAWLPGGVSCKRDLECASKYCVKSIGR
WFCSKESKYGKRRVAGGGFCLSDEQCYSGVCLGVGKYFFCSKESKREGRV
AERGRCKEHKNCFSGVCMAIKINSTMKFCAKDSKEVGRVGGGGKCYADNQ
CFSGYCSVWKKNKKHCSKDSVKKGKIGGGGPCLKDLQCFSGVCFKYKNSM
RCASDSSKIGKVGSGGSCSSGSQCFSGHCIRDKVTNRNYCAKTSRHMGLI
GGGGQCLEDKMCFSGFCVQLGSIRVCAKDSKTVQRVGGGGSCRWNDECFS
GFCVRNKGKKVGYCSQDSQLFMLIGGGGPCLNNAQCYSFYCYKVDRKLRV
CAKDSYFRGKVGGGGPCKDDGYCASGYCVKTDKKALTGYCVQESKTKLGF
VAEGGACIVHHSCYSGYCAKVNNVSFCAKESKRLGKVGGGGPCQKDWQCF
SRYCYQNGNVKYCAKDGDKYGSVALGGPCRQNGDCGNVNRCVLMNVKVAN
SLDTKIKVCAKKRRMI*

>Pgr_004696 Pgr_004696

MFGSSKSLLILTTLCLVVSWHVTMAKLPGGMACKNDEQCKSRFCVKSLSR
WFCSKESTFGRQMIAGGGFCVNNDQCFSGLCLEMGKFKFCAKESRMRGKI
AERGRCLQHENCFSGSCLSINDNSTMKFCSKDSNVVGKIGEGGICTENDQ
CHSGYCVMLGDKKMYCSKDSRQQGRIGQGGPCLMNSQCYSGVCFKYKNKM
RCARESRKIDKVGSGGSCHNNSQCFSNYCIADKVSRRQFCAKVSRSEGLV
GGGGQCYNDKMCYSGYCVKLGNLMACAKDSIKKMKVGGGGPCRKNDGCFS
GYCVKNAGAKFGYCSKDSPEYNFVGGGGPCTSHVQCYSKYCHSLNDKLKV
CAKDSIYKGKVGGGGPCQNDFHCASTLCLRKIIAGPVRFCVQESSSRLGF
VAEGGICEDNRNCNSGYCVKQRTNSFCAKESKRDGKIGGGGPCYNDSQCF
SGYCYSNQGVKYCAKDGRKYRKVGISGPCRINADCSSKRCVKMIVYGVND
KMKEKVCLEKKKGTSKKDVI*

>Pmo_015562 Pmo_015562

MGFFLKSQLFPLVILLFIIASNVTWAWLPGGVSCKRDHECSSKFCVKTFG
RWFCSMESKYGSRRVAGGGFCATDEQCYSGLCLEIGKKKFCSKDSKKEGK
VAERGRCRDHKNCFSGVCLPIMKNETMKFCSKDSAVINKVGEGGICTENK
QCYCGYCATLKGNTTYCSKDSKVNGKIGGGGPCLRHDQCFSGVCFKYKSK
LRCARDSKTMNKVGSGGQCISNDQCFSGYCIPDSMSKKKYCAKSSRHQGL
IGGGGQCLTDNSCFSGFCVQLGKIKVCAKDSKTVQRVGGGGSCRRSKECF
SGYCVKGTGQKIGYCSQDSPLFKLIGAGGPCKNNNQCFSFYCYKVSKKLK
VCAQDSVYRGKVGGGGPCKSDIYCASGHCIKNESGLRFCVQESNRKLGFI
REGGRCNIHHACYSGYCIKADNNSFCAKESERMGKIGEGGPCLKDWQCYS
RYCYSNGNQKYCATNGDEYGSVGLNGPCRRNTDCSSRRCVEMKLKTPIND
ATKIKLCLKRKPLI*

>Pmo_024144 tnxb

HYHLLFTMLLVIRLLHSFVVLFILLQWHSTIAKLYGGMACKLNGQCMSGL
CVKSLNRWFCSKESKYDKSKIAGGGFCMEDWQCFSSLCLQMGTFKFCAKE
SRRQGRVAERGRCREHNNCFSGSCLAINSNSTMKFCSKDSNVIGRVGEGG
LCTLDKQCHSGYCALLEDKKMYCSKDSRAVDKIGQGGPCLIDSQCYSGVC
FKFKGKLRCARESKEINKVGSGGSCLKRQQCFSNYCVVDKVSKRQFCAKV
SRLQGLVGGGGQCKRDDMCFSGFCVKLGNINVCAKDSSKRNKIGGGGPCR
RPDECFSGHCVKKSRAKMGFCSKDAPTFNHIGGGGPCKFHAQCYSLYCHK
LNNKTKACAKDSFYPGKVGGGGPCRDDFDCASNYCYQARGVKFCVQESKS
KLGFIAEGGLCMIHRSCNSGFCVKNNSTGFCAKESRMDGKIGGGGPCKMD
YQCFSGYCFNNGSMMYCAKDGHKYNRVGISGPCRKNSECSSKRCVEMNLK
TAINNSTKAKVCLEKKKHSTKKGNTIK*

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