Overview
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of collagen vs. RefSeq Human
Match: gi|767973237|ref|XP_011536230.1| (PREDICTED: collagen alpha-1(II) chain isoform X1 [Homo sapiens]) HSP 1 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534 HSP 2 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534
BLAST of collagen vs. RefSeq Human
Match: gi|767973239|ref|XP_011536231.1| (PREDICTED: collagen alpha-1(II) chain isoform X1 [Homo sapiens]) HSP 1 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534 HSP 2 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534
BLAST of collagen vs. RefSeq Human
Match: gi|767973241|ref|XP_011536232.1| (PREDICTED: collagen alpha-1(II) chain isoform X1 [Homo sapiens]) HSP 1 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534 HSP 2 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534
BLAST of collagen vs. RefSeq Human
Match: gi|767973243|ref|XP_011536233.1| (PREDICTED: collagen alpha-1(II) chain isoform X1 [Homo sapiens]) HSP 1 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534 HSP 2 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534
BLAST of collagen vs. RefSeq Human
Match: gi|767973245|ref|XP_011536234.1| (PREDICTED: collagen alpha-1(II) chain isoform X1 [Homo sapiens]) HSP 1 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534 HSP 2 Score: 117.472 bits (293), Expect = 4.849e-25 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPIT--KGHTWLKSLLNS--------DEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P + ++W S + K H W +N D + + N Q+ FL++ S +Q IT+ C+N E N A + +D I+ S+ YT +KD C +++IE + S LPI DI I + +FG+ I VCF Sbjct: 1316 SIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1534
BLAST of collagen vs. uniprot
Match: gi|18202526|sp|Q28668|CO1A2_RABIT (RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen; Flags: Precursor) HSP 1 Score: 129.798 bits (325), Expect = 1.693e-29 Identity = 115/315 (36.51%), Postives = 159/315 (50.48%), Query Frame = 3 Query: 7293 QGPVGITGPRGD---PGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIM----------AMQLRSPT--KGVVYGDDPAAAELLGNNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSW-NSPITKGHTWLKSLLNSD-EIQYSIPN-------GQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDT-IIKMTQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +GP G TGP G G PG +GP GL G +GS GP G GP GPPGPPG GG A Q RSP + Y D L NN I+ P+G+++ PARTC+ L +P G YWIDPN G T DA+KV+C S +TCI+ + IS+++W S K H WL +N + +Y++ QLAF+++ ++ A+Q IT+ C+N EE N A L +D ++ S+ YTV+ D C + ++IIE K + S LP DI I +F + + VCF Sbjct: 213 RGPAGPTGPAGKDGRSGHPGTVGPAGLRGSQGSQGPAGPPGPPGPPGPPGASGGGYDFGYDGDFYRADQPRSPPSLRPKDYEVDATLKSL--NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCTKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFYVDVGPVCF 525 HSP 2 Score: 129.798 bits (325), Expect = 1.693e-29 Identity = 115/315 (36.51%), Postives = 159/315 (50.48%), Query Frame = -3 Query: 121 QGPVGITGPRGD---PGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXGIM----------AMQLRSPT--KGVVYGDDPAAAELLGNNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSW-NSPITKGHTWLKSLLNSD-EIQYSIPN-------GQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDT-IIKMTQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 978 +GP G TGP G G PG +GP GL G +GS GP G GP GPPGPPG GG A Q RSP + Y D L NN I+ P+G+++ PARTC+ L +P G YWIDPN G T DA+KV+C S +TCI+ + IS+++W S K H WL +N + +Y++ QLAF+++ ++ A+Q IT+ C+N EE N A L +D ++ S+ YTV+ D C + ++IIE K + S LP DI I +F + + VCF Sbjct: 213 RGPAGPTGPAGKDGRSGHPGTVGPAGLRGSQGSQGPAGPPGPPGPPGPPGASGGGYDFGYDGDFYRADQPRSPPSLRPKDYEVDATLKSL--NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCTKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFYVDVGPVCF 525
BLAST of collagen vs. uniprot
Match: gi|115286|sp|P02460|CO2A1_CHICK (RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Flags: Precursor, partial [Gallus gallus]) HSP 1 Score: 118.242 bits (295), Expect = 3.468e-26 Identity = 72/220 (32.73%), Postives = 111/220 (50.45%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKG--HTWLKSLLNSDEIQYSI------PNG---QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMT-QSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P+G+K+ PARTC+ + +P G+YWIDPN G T DA+KVFC + +TC+ P I ++W + TK H W +N +S PN Q+ FL++ S +Q +T+ C+N EE N A + +D I+ S+ Y+V++D C +++IE + S LPI DI I +FG+ I VCF Sbjct: 150 SIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVWFAETINGG-FHFSYGDENLSPNTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 368 HSP 2 Score: 118.242 bits (295), Expect = 3.468e-26 Identity = 72/220 (32.73%), Postives = 111/220 (50.45%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKG--HTWLKSLLNSDEIQYSI------PNG---QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMT-QSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P+G+K+ PARTC+ + +P G+YWIDPN G T DA+KVFC + +TC+ P I ++W + TK H W +N +S PN Q+ FL++ S +Q +T+ C+N EE N A + +D I+ S+ Y+V++D C +++IE + S LPI DI I +FG+ I VCF Sbjct: 150 SIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVWFAETINGG-FHFSYGDENLSPNTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 368
BLAST of collagen vs. uniprot
Match: gi|82202407|sp|Q6P4Z2|CO2A1_XENTR (RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Flags: Precursor) HSP 1 Score: 122.094 bits (305), Expect = 4.162e-26 Identity = 78/221 (35.29%), Postives = 112/221 (50.68%), Query Frame = 3 Query: 7530 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKG----HTWLKSLLNSD-EIQY----SIPNG---QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 +I++P GTK+ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P +I ++W S KG H W +N + Y S PN Q+ FL++ S ATQ IT+ C+N E N A L +D I+ S+ Y ++D C+ ++++IE + S LPI DI I +FG+ I VCF Sbjct: 1273 SIRSPDGTKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTVDAIKVFCNMETGETCVYPNPSKIPKKNWWS--AKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQMTFLRLLSTDATQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALEDGCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 1491 HSP 2 Score: 122.094 bits (305), Expect = 4.162e-26 Identity = 78/221 (35.29%), Postives = 112/221 (50.68%), Query Frame = -3 Query: 121 AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKG----HTWLKSLLNSD-EIQY----SIPNG---QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 741 +I++P GTK+ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P +I ++W S KG H W +N + Y S PN Q+ FL++ S ATQ IT+ C+N E N A L +D I+ S+ Y ++D C+ ++++IE + S LPI DI I +FG+ I VCF Sbjct: 1273 SIRSPDGTKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTVDAIKVFCNMETGETCVYPNPSKIPKKNWWS--AKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQMTFLRLLSTDATQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALEDGCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 1491
BLAST of collagen vs. uniprot
Match: gi|146286085|sp|Q91717|CO2A1_XENLA (RecName: Full=Collagen alpha-1(II) chain; AltName: Full=Alpha-1 type II collagen; Flags: Precursor [Xenopus laevis]) HSP 1 Score: 120.939 bits (302), Expect = 1.212e-25 Identity = 80/226 (35.40%), Postives = 113/226 (50.00%), Query Frame = 3 Query: 7524 NNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKG----HTWLKSLLNSD-EIQY----SIPNG---QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 NN I+N P GTK+ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P +I ++W S KG H W +N + Y S PN Q+ FL++ S A+Q IT+ C+N E N A L +D I+ S+ Y ++D C+ ++++IE + S LPI DI I +FG+ I VCF Sbjct: 1262 NNQIENIRSPDGTKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTVDAIKVFCDMETGETCVYPNPSKIPKKNWWS--AKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQMTFLRLLSTDASQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALEDGCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 1485 HSP 2 Score: 120.939 bits (302), Expect = 1.212e-25 Identity = 80/226 (35.40%), Postives = 113/226 (50.00%), Query Frame = -3 Query: 121 NNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKG----HTWLKSLLNSD-EIQY----SIPNG---QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKM-TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 747 NN I+N P GTK+ PARTC+ L +P G+YWIDPN G T DA+KVFC + +TC+ P +I ++W S KG H W +N + Y S PN Q+ FL++ S A+Q IT+ C+N E N A L +D I+ S+ Y ++D C+ ++++IE + S LPI DI I +FG+ I VCF Sbjct: 1262 NNQIENIRSPDGTKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTVDAIKVFCDMETGETCVYPNPSKIPKKNWWS--AKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQMTFLRLLSTDASQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALEDGCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 1485
BLAST of collagen vs. uniprot
Match: gi|8039779|sp|P02465|CO1A2_BOVIN (RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type I collagen; Flags: Precursor) HSP 1 Score: 120.553 bits (301), Expect = 1.361e-25 Identity = 78/225 (34.67%), Postives = 118/225 (52.44%), Query Frame = 3 Query: 7524 NNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSW--NSPITKGHTWLKSLLNSD-EIQYSIPNG--------QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDT-IIKMTQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXRKSKFGLTIEEVCF 8150 NN I+ P+G+++ PARTC+ L +P G YWIDPN G T DA+KV+C S +TCI+ ++I +++W NS K H W+ +N + +Y++ G QLAF+++ ++ A+Q IT+ C+N EE N A L +D ++ S+ YTV+ D C + ++IIE K + S LPI DI I + L I VCF Sbjct: 1141 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAKK-HVWVGETINGGTQFEYNV-EGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCF 1363 HSP 2 Score: 120.553 bits (301), Expect = 1.361e-25 Identity = 78/225 (34.67%), Postives = 118/225 (52.44%), Query Frame = -3 Query: 121 NNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSW--NSPITKGHTWLKSLLNSD-EIQYSIPNG--------QLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDT-IIKMTQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXNRKSKFGLTIEEVCF 747 NN I+ P+G+++ PARTC+ L +P G YWIDPN G T DA+KV+C S +TCI+ ++I +++W NS K H W+ +N + +Y++ G QLAF+++ ++ A+Q IT+ C+N EE N A L +D ++ S+ YTV+ D C + ++IIE K + S LPI DI I + L I VCF Sbjct: 1141 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAKK-HVWVGETINGGTQFEYNV-EGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCF 1363 HSP 3 Score: 59.3066 bits (142), Expect = 5.082e-7 Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 3 Query: 4962 GKSGKPGLRGRTGP---DGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 5279 G +G PG +G GP GN G+ G G +G G +GP+G +GP+G+RG G PGD GP+G G +G GL+G G G G +G G GP G G GP+GP G DG Sbjct: 956 GAAGAPGPQGPVGPVGKHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKDG 1064 HSP 4 Score: 59.3066 bits (142), Expect = 5.082e-7 Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = -3 Query: 2992 GKSGKPGLRGRTGP---DGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 3309 G +G PG +G GP GN G+ G G +G G +GP+G +GP+G+RG G PGD GP+G G +G GL+G G G G +G G GP G G GP+GP G DG Sbjct: 956 GAAGAPGPQGPVGPVGKHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKDG 1064
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|24581820|ref|NP_723044.1| (collagen type IV, isoform A [Drosophila melanogaster]) HSP 1 Score: 56.6102 bits (135), Expect = 4.632e-7 Identity = 104/251 (41.43%), Postives = 122/251 (48.61%), Query Frame = 3 Query: 4596 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPG-------DSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGL---------IGPTGPIGPDGV 5282 ++G PGP G G TGP G PG GEKG G G GPPG G G++G G G GE+G G G+ G PG +G +G+PG+PG PG G G G G G PG RG G G +G G KGE G VGL G G GP+G RG G PG G KGSQG++G G +G+ +GP G G KGDRG GP G +GL IGP G IG GV Sbjct: 1065 QKGEPGPSGLRGDTGPAGTPGWPGEKGLPG-------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGA---------------PGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGV 1293 HSP 2 Score: 56.6102 bits (135), Expect = 4.632e-7 Identity = 104/251 (41.43%), Postives = 122/251 (48.61%), Query Frame = -3 Query: 2989 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPG-------DSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGL---------IGPTGPIGPDGV 3675 ++G PGP G G TGP G PG GEKG G G GPPG G G++G G G GE+G G G+ G PG +G +G+PG+PG PG G G G G G PG RG G G +G G KGE G VGL G G GP+G RG G PG G KGSQG++G G +G+ +GP G G KGDRG GP G +GL IGP G IG GV Sbjct: 1065 QKGEPGPSGLRGDTGPAGTPGWPGEKGLPG-------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGA---------------PGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGV 1293 HSP 3 Score: 55.4546 bits (132), Expect = 1.056e-6 Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 3 Query: 4977 PGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGP--KGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 5282 P +RG G G G G KGE G+ GL GP G+ G +G RG G PG SG G G +G IG G+ G G KG+KG GRPG G GLIG G IG G+ Sbjct: 1222 PDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGL 1325 HSP 4 Score: 55.4546 bits (132), Expect = 1.056e-6 Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = -3 Query: 2989 PGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGP--KGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 3294 P +RG G G G G KGE G+ GL GP G+ G +G RG G PG SG G G +G IG G+ G G KG+KG GRPG G GLIG G IG G+ Sbjct: 1222 PDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGL 1325 HSP 5 Score: 54.6842 bits (130), Expect = 1.704e-6 Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 3 Query: 4959 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAG 5243 +G G PGL+G TGP G G++G G G G G +GL GP GL G G GD+G G G+ GP+G G+ G GPKG+ G G PG G+ G Sbjct: 1362 DGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKG 1456 HSP 6 Score: 54.6842 bits (130), Expect = 1.704e-6 Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = -3 Query: 3028 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAG 3312 +G G PGL+G TGP G G++G G G G G +GL GP GL G G GD+G G G+ GP+G G+ G GPKG+ G G PG G+ G Sbjct: 1362 DGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKG 1456
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|24581822|ref|NP_723045.1| (collagen type IV, isoform B [Drosophila melanogaster]) HSP 1 Score: 56.6102 bits (135), Expect = 4.632e-7 Identity = 104/251 (41.43%), Postives = 122/251 (48.61%), Query Frame = 3 Query: 4596 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPG-------DSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGL---------IGPTGPIGPDGV 5282 ++G PGP G G TGP G PG GEKG G G GPPG G G++G G G GE+G G G+ G PG +G +G+PG+PG PG G G G G G PG RG G G +G G KGE G VGL G G GP+G RG G PG G KGSQG++G G +G+ +GP G G KGDRG GP G +GL IGP G IG GV Sbjct: 1065 QKGEPGPSGLRGDTGPAGTPGWPGEKGLPG-------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGA---------------PGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGV 1293 HSP 2 Score: 56.6102 bits (135), Expect = 4.632e-7 Identity = 104/251 (41.43%), Postives = 122/251 (48.61%), Query Frame = -3 Query: 2989 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPG-------DSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGL---------IGPTGPIGPDGV 3675 ++G PGP G G TGP G PG GEKG G G GPPG G G++G G G GE+G G G+ G PG +G +G+PG+PG PG G G G G G PG RG G G +G G KGE G VGL G G GP+G RG G PG G KGSQG++G G +G+ +GP G G KGDRG GP G +GL IGP G IG GV Sbjct: 1065 QKGEPGPSGLRGDTGPAGTPGWPGEKGLPG-------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGA---------------PGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGV 1293 HSP 3 Score: 55.4546 bits (132), Expect = 1.056e-6 Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 3 Query: 4977 PGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGP--KGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 5282 P +RG G G G G KGE G+ GL GP G+ G +G RG G PG SG G G +G IG G+ G G KG+KG GRPG G GLIG G IG G+ Sbjct: 1222 PDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGL 1325 HSP 4 Score: 55.4546 bits (132), Expect = 1.056e-6 Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = -3 Query: 2989 PGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGP--KGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 3294 P +RG G G G G KGE G+ GL GP G+ G +G RG G PG SG G G +G IG G+ G G KG+KG GRPG G GLIG G IG G+ Sbjct: 1222 PDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGL 1325 HSP 5 Score: 54.6842 bits (130), Expect = 1.704e-6 Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 3 Query: 4959 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAG 5243 +G G PGL+G TGP G G++G G G G G +GL GP GL G G GD+G G G+ GP+G G+ G GPKG+ G G PG G+ G Sbjct: 1362 DGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKG 1456 HSP 6 Score: 54.6842 bits (130), Expect = 1.704e-6 Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = -3 Query: 3028 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAG 3312 +G G PGL+G TGP G G++G G G G G +GL GP GL G G GD+G G G+ GP+G G+ G GPKG+ G G PG G+ G Sbjct: 1362 DGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKG 1456
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|24581824|ref|NP_723046.1| (collagen type IV, isoform C [Drosophila melanogaster]) HSP 1 Score: 56.6102 bits (135), Expect = 4.632e-7 Identity = 104/251 (41.43%), Postives = 122/251 (48.61%), Query Frame = 3 Query: 4596 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPG-------DSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGL---------IGPTGPIGPDGV 5282 ++G PGP G G TGP G PG GEKG G G GPPG G G++G G G GE+G G G+ G PG +G +G+PG+PG PG G G G G G PG RG G G +G G KGE G VGL G G GP+G RG G PG G KGSQG++G G +G+ +GP G G KGDRG GP G +GL IGP G IG GV Sbjct: 1065 QKGEPGPSGLRGDTGPAGTPGWPGEKGLPG-------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGA---------------PGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGV 1293 HSP 2 Score: 56.6102 bits (135), Expect = 4.632e-7 Identity = 104/251 (41.43%), Postives = 122/251 (48.61%), Query Frame = -3 Query: 2989 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPG-------DSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGL---------IGPTGPIGPDGV 3675 ++G PGP G G TGP G PG GEKG G G GPPG G G++G G G GE+G G G+ G PG +G +G+PG+PG PG G G G G G PG RG G G +G G KGE G VGL G G GP+G RG G PG G KGSQG++G G +G+ +GP G G KGDRG GP G +GL IGP G IG GV Sbjct: 1065 QKGEPGPSGLRGDTGPAGTPGWPGEKGLPG-------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGA---------------PGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGV 1293 HSP 3 Score: 55.4546 bits (132), Expect = 1.056e-6 Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 3 Query: 4977 PGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGP--KGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 5282 P +RG G G G G KGE G+ GL GP G+ G +G RG G PG SG G G +G IG G+ G G KG+KG GRPG G GLIG G IG G+ Sbjct: 1222 PDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGL 1325 HSP 4 Score: 55.4546 bits (132), Expect = 1.056e-6 Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = -3 Query: 2989 PGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGP--KGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 3294 P +RG G G G G KGE G+ GL GP G+ G +G RG G PG SG G G +G IG G+ G G KG+KG GRPG G GLIG G IG G+ Sbjct: 1222 PDIRGDKGSQGERGYTGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGL 1325 HSP 5 Score: 54.6842 bits (130), Expect = 1.704e-6 Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 3 Query: 4959 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAG 5243 +G G PGL+G TGP G G++G G G G G +GL GP GL G G GD+G G G+ GP+G G+ G GPKG+ G G PG G+ G Sbjct: 1362 DGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKG 1456 HSP 6 Score: 54.6842 bits (130), Expect = 1.704e-6 Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = -3 Query: 3028 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAG 3312 +G G PGL+G TGP G G++G G G G G +GL GP GL G G GD+G G G+ GP+G G+ G GPKG+ G G PG G+ G Sbjct: 1362 DGFPGAPGLKGDTGPQGFKGERGLNGFEGQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKG 1456
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|442619464|ref|NP_001262641.1| (CG42342, isoform T [Drosophila melanogaster]) HSP 1 Score: 54.299 bits (129), Expect = 2.133e-6 Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 4980 GLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 5282 G+RG +GP G +GK G G G G+ G QG TG +G RG G PG G G +G +G G G +GP G +G+KGDRG G QG GL P P+G DG+ Sbjct: 648 GMRGESGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRGRKGDRGDKGEQGVPGLDAPC-PLGADGL 747 HSP 2 Score: 54.299 bits (129), Expect = 2.133e-6 Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 2989 GLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 3291 G+RG +GP G +GK G G G G+ G QG TG +G RG G PG G G +G +G G G +GP G +G+KGDRG G QG GL P P+G DG+ Sbjct: 648 GMRGESGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRGRKGDRGDKGEQGVPGLDAPC-PLGADGL 747
BLAST of collagen vs. RefSeq Drosophila melanogaster
Match: gi|442619462|ref|NP_001247141.2| (CG42342, isoform S [Drosophila melanogaster]) HSP 1 Score: 53.9138 bits (128), Expect = 2.564e-6 Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 4980 GLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 5282 G+RG +GP G +GK G G G G+ G QG TG +G RG G PG G G +G +G G G +GP G +G+KGDRG G QG GL P P+G DG+ Sbjct: 643 GMRGESGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRGRKGDRGDKGEQGVPGLDAPC-PLGADGL 742 HSP 2 Score: 53.9138 bits (128), Expect = 2.564e-6 Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 2989 GLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDGV 3291 G+RG +GP G +GK G G G G+ G QG TG +G RG G PG G G +G +G G G +GP G +G+KGDRG G QG GL P P+G DG+ Sbjct: 643 GMRGESGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRGDAGPPGKRGRKGDRGDKGEQGVPGLDAPC-PLGADGL 742
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15040033 (dd_smedV4_702_0_1|m.35199|m.6295) HSP 1 Score: 443.736 bits (1140), Expect = 6.448e-129 Identity = 235/288 (81.60%), Postives = 262/288 (90.97%), Query Frame = 3 Query: 7293 QGPVGITGPRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXXRKSKFGLTIEEVCFS* 8156 QGPVGI GPRGDPGIPG IGPTGL GKKG G +G +GPLGPPGPPGPPGGIMAMQ+RSPTKGV YGDDP AAELLGNNAIKNP+GTKEVPA TCKQLS ++PN+PDGEYWIDPNGGR +DAVKV+C+ISE+KTCIKP+N EIS+RSW S GHTWLKS+LN +EIQYSIPNGQ+AFLK+ SD+A QR+TF CENHPIIG+EEKLNKV APRLLADDDTIIKMT S LKYTVIKDECQYSKSSEAESIIE+++ A+LLPIRDIG++IINNRKSKFG+TIEEVCFS* Sbjct: 999 QGPVGIIGPRGDPGIPGPIGPTGLHGKKGGIGIMGPVGPLGPPGPPGPPGGIMAMQMRSPTKGVTYGDDPLAAELLGNNAIKNPEGTKEVPAITCKQLSVKHPNLPDGEYWIDPNGGRVNDAVKVYCRISEQKTCIKPINNEISLRSWKSHSANGHTWLKSILNKEEIQYSIPNGQIAFLKVNSDSAVQRVTFTCENHPIIGNEEKLNKVTAPRLLADDDTIIKMTHSHLKYTVIKDECQYSKSSEAESIIEVRNYANLLPIRDIGVSIINNRKSKFGVTIEEVCFS* 1286 HSP 2 Score: 443.736 bits (1140), Expect = 6.448e-129 Identity = 235/288 (81.60%), Postives = 262/288 (90.97%), Query Frame = -3 Query: 115 QGPVGITGPRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXGIMAMQLRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXNRKSKFGLTIEEVCFS* 978 QGPVGI GPRGDPGIPG IGPTGL GKKG G +G +GPLGPPGPPGPPGGIMAMQ+RSPTKGV YGDDP AAELLGNNAIKNP+GTKEVPA TCKQLS ++PN+PDGEYWIDPNGGR +DAVKV+C+ISE+KTCIKP+N EIS+RSW S GHTWLKS+LN +EIQYSIPNGQ+AFLK+ SD+A QR+TF CENHPIIG+EEKLNKV APRLLADDDTIIKMT S LKYTVIKDECQYSKSSEAESIIE+++ A+LLPIRDIG++IINNRKSKFG+TIEEVCFS* Sbjct: 999 QGPVGIIGPRGDPGIPGPIGPTGLHGKKGGIGIMGPVGPLGPPGPPGPPGGIMAMQMRSPTKGVTYGDDPLAAELLGNNAIKNPEGTKEVPAITCKQLSVKHPNLPDGEYWIDPNGGRVNDAVKVYCRISEQKTCIKPINNEISLRSWKSHSANGHTWLKSILNKEEIQYSIPNGQIAFLKVNSDSAVQRVTFTCENHPIIGNEEKLNKVTAPRLLADDDTIIKMTHSHLKYTVIKDECQYSKSSEAESIIEVRNYANLLPIRDIGVSIINNRKSKFGVTIEEVCFS* 1286 HSP 3 Score: 240.736 bits (613), Expect = 1.042e-63 Identity = 252/311 (81.03%), Postives = 273/311 (87.78%), Query Frame = 3 Query: 4299 MLKISIISGAILLVLIYIECVHGQFRTLNEATGPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGQRGAPGLQGPPXXXXXXXXXXXXXXXXXXXXXXEQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQ 5231 M K SI SGAILL+LIY++ +GQFRTLNEATGP+GIRGNPGKRGK GPDGDPG+ GP GPPG DG RGAPG GP G GP+GKSG G +GPPGSRGEQGPPGP+GKEGLTGP GY GPSGEKGDSG GEQGD GDIGP GP GP+G PGQ+GPTGPQG VGERG HGPDG+VGPPGPEGR+GSPG PGRPGE+GKKGEGGDEG KGGKGE+GKTGINGKSGKPG+RG GP G NGKQGRKGE+GD+GL GPQGL GPRG+RG+ GNPGD+GPKGSQGDQGPIGLEGK GPFGPKGQKGDRGRPGPQ Sbjct: 1 MFKNSIFSGAILLILIYVDFSYGQFRTLNEATGPIGIRGNPGKRGKIGPDGDPGSSGPPGPPGKDGLRGAPGPNGPAGGAGPDGKSGVTGNTGPPGSRGEQGPPGPVGKEGLTGPNGYSGPSGEKGDSGSIGEQGDPGDIGPQGPAGPLGPPGQSGPTGPQGTVGERGPHGPDGVVGPPGPEGRMGSPGSPGRPGELGKKGEGGDEGLKGGKGENGKTGINGKSGKPGIRGPIGPVGINGKQGRKGELGDIGLTGPQGLIGPRGVRGTVGNPGDNGPKGSQGDQGPIGLEGKPGPFGPKGQKGDRGRPGPQ 311 HSP 4 Score: 240.736 bits (613), Expect = 1.042e-63 Identity = 252/311 (81.03%), Postives = 273/311 (87.78%), Query Frame = -3 Query: 3040 MLKISIISGAILLVLIYIECVHGQFRTLNEATGPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDGQRGAPGLQGPPXXXXXXXXXXXXXXXXXXXXXGEQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQ 3972 M K SI SGAILL+LIY++ +GQFRTLNEATGP+GIRGNPGKRGK GPDGDPG+ GP GPPG DG RGAPG GP G GP+GKSG G +GPPGSRGEQGPPGP+GKEGLTGP GY GPSGEKGDSG GEQGD GDIGP GP GP+G PGQ+GPTGPQG VGERG HGPDG+VGPPGPEGR+GSPG PGRPGE+GKKGEGGDEG KGGKGE+GKTGINGKSGKPG+RG GP G NGKQGRKGE+GD+GL GPQGL GPRG+RG+ GNPGD+GPKGSQGDQGPIGLEGK GPFGPKGQKGDRGRPGPQ Sbjct: 1 MFKNSIFSGAILLILIYVDFSYGQFRTLNEATGPIGIRGNPGKRGKIGPDGDPGSSGPPGPPGKDGLRGAPGPNGPAGGAGPDGKSGVTGNTGPPGSRGEQGPPGPVGKEGLTGPNGYSGPSGEKGDSGSIGEQGDPGDIGPQGPAGPLGPPGQSGPTGPQGTVGERGPHGPDGVVGPPGPEGRMGSPGSPGRPGELGKKGEGGDEGLKGGKGENGKTGINGKSGKPGIRGPIGPVGINGKQGRKGELGDIGLTGPQGLIGPRGVRGTVGNPGDNGPKGSQGDQGPIGLEGKPGPFGPKGQKGDRGRPGPQ 311 HSP 5 Score: 87.0409 bits (214), Expect = 1.582e-16 Identity = 97/131 (74.05%), Postives = 107/131 (81.68%), Query Frame = 3 Query: 5487 KSGNKGALGPIGPSGLRGPPGNPGKDGMIXXXXXXXXXXXXXNVGAPGNKGNIGEPGPKGKTGNSGKPGPAGKNGADGSEGLSGNIGSPGFXXXXXXXXXXXXXXXXXXXXXXXXXXNQGISGKNGAPGTE 5879 KSG KG+LGP G +GLRGP GNPGKDG +GPLG PGLRGPPG++G PG KGNIG PG KGK GN+GKPGP GKNG DGSEG GN GSPGFPGPNGDPG +GPPG G G+ GYPGNQG++GKNG PG E Sbjct: 397 KSGRKGSLGPTGLTGLRGPQGNPGKDGTLGPLGTPGLRGPPGSIGTPGLKGNIGPPGSKGKVGNAGKPGPLGKNGIDGSEGPIGNAGSPGFPGPNGDPGPNGPPGSLGLAGLVGYPGNQGLAGKNGNPGVE 527 HSP 6 Score: 87.0409 bits (214), Expect = 1.582e-16 Identity = 97/131 (74.05%), Postives = 107/131 (81.68%), Query Frame = -3 Query: 2392 KSGNKGALGPIGPSGLRGPPGNPGKDGMIXXXXXXXXXXXXGNVGAPGNKGNIGEPGPKGKTGNSGKPGPAGKNGADGSEGLSGNIGSPGFXXXXXXXXXXXXXXXXXXXXXXXXXGNQGISGKNGAPGTE 2784 KSG KG+LGP G +GLRGP GNPGKDG +GPLG PGLRGPPG++G PG KGNIG PG KGK GN+GKPGP GKNG DGSEG GN GSPGFPGPNGDPG +GPPG G G+ GYPGNQG++GKNG PG E Sbjct: 397 KSGRKGSLGPTGLTGLRGPQGNPGKDGTLGPLGTPGLRGPPGSIGTPGLKGNIGPPGSKGKVGNAGKPGPLGKNGIDGSEGPIGNAGSPGFPGPNGDPGPNGPPGSLGLAGLVGYPGNQGLAGKNGNPGVE 527 HSP 7 Score: 60.8474 bits (146), Expect = 1.244e-8 Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 3 Query: 4962 GKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGP------IGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIG 5270 G +G PG RG GP+G +GK GRKG LGP GLTG RG +G+ G G GP G+ G +GP GL+G GP G KG+ G+ G+PGP G+ G+ G GPIG Sbjct: 378 GPNGAPGPRGEIGPNGPDGKSGRKGS------LGPTGLTGLRGPQGNPGKDGTLGPLGTPGLRGPPGSIGTPGLKGNIGPPGSKGKVGNAGKPGPLGKNGIDGSEGPIG 480 HSP 8 Score: 60.8474 bits (146), Expect = 1.244e-8 Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = -3 Query: 3001 GKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGP------IGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIG 3309 G +G PG RG GP+G +GK GRKG LGP GLTG RG +G+ G G GP G+ G +GP GL+G GP G KG+ G+ G+PGP G+ G+ G GPIG Sbjct: 378 GPNGAPGPRGEIGPNGPDGKSGRKGS------LGPTGLTGLRGPQGNPGKDGTLGPLGTPGLRGPPGSIGTPGLKGNIGPPGSKGKVGNAGKPGPLGKNGIDGSEGPIG 480
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15002271 (Asxlregen_comp67208_c0_seq1|m.27270|m.10319) HSP 1 Score: 245.358 bits (625), Expect = 4.276e-65 Identity = 117/232 (50.43%), Postives = 158/232 (68.10%), Query Frame = 3 Query: 7461 LRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXXRKSKFGLTIEEVCFS* 8156 LRSPTKG+ + DDP+ A GNNAI P+GTKEVPAR+CK LS NP++ DGEYWIDPNGGR SDAV V+C+I+ ++TCIKP+++ SW K H W +++ E +Y I N QL +LK S+TATQ+I+ C N II + + LL DDDTI+ + K ++ VIKDECQY K SEAE+I+E++ AS LPI+D+G+ I ++R K G+ + EVC+S* Sbjct: 1064 LRSPTKGLTFSDDPSVAHSFGNNAIITPRGTKEVPARSCKHLSEHNPDLSDGEYWIDPNGGRVSDAVPVYCRIATQQTCIKPISKIYKTASWFKKYQKDHVWFQTINGIGEFEYDIENYQLNYLKALSETATQQISLNCINQAIILDRQGKMSTVWTSLLGDDDTILSLQHPKRRFKVIKDECQYEKFSEAETILEVRGKASRLPIKDVGLIIDSDRSRKVGIELGEVCYS* 1295 HSP 2 Score: 245.358 bits (625), Expect = 4.276e-65 Identity = 117/232 (50.43%), Postives = 158/232 (68.10%), Query Frame = -3 Query: 115 LRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXNRKSKFGLTIEEVCFS* 810 LRSPTKG+ + DDP+ A GNNAI P+GTKEVPAR+CK LS NP++ DGEYWIDPNGGR SDAV V+C+I+ ++TCIKP+++ SW K H W +++ E +Y I N QL +LK S+TATQ+I+ C N II + + LL DDDTI+ + K ++ VIKDECQY K SEAE+I+E++ AS LPI+D+G+ I ++R K G+ + EVC+S* Sbjct: 1064 LRSPTKGLTFSDDPSVAHSFGNNAIITPRGTKEVPARSCKHLSEHNPDLSDGEYWIDPNGGRVSDAVPVYCRIATQQTCIKPISKIYKTASWFKKYQKDHVWFQTINGIGEFEYDIENYQLNYLKALSETATQQISLNCINQAIILDRQGKMSTVWTSLLGDDDTILSLQHPKRRFKVIKDECQYEKFSEAETILEVRGKASRLPIKDVGLIIDSDRSRKVGIELGEVCYS* 1295 HSP 3 Score: 96.6709 bits (239), Expect = 1.800e-19 Identity = 123/237 (51.90%), Postives = 144/237 (60.76%), Query Frame = 3 Query: 4596 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGKSGKPGLRGRTGPDGN---------NGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRP------GPQGEAGLIGPTG 5261 E G G IG EG TGP G G +G+KGD G G +G G+ G GP G G G+ GP G QGP GERG G DG+ G GP+G IG PG + G G+ G KG +GESG G G SG PGL G+TGP G+ +G+ G +GE G VG GP G G RG RG SGNPG SGPKGSQG++GPIG+EGK G GPKGQKGD GRP GP+GE G++GP G Sbjct: 107 EPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPG---------QSGIPGEIGNKGIRGESGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGKVGQRGQRGPSGNPGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPGETGDEGPRGERGVVGPAG 334 HSP 4 Score: 96.6709 bits (239), Expect = 1.800e-19 Identity = 123/237 (51.90%), Postives = 144/237 (60.76%), Query Frame = -3 Query: 3010 EQGPPGPIGKEGLTGPVGYPGPSGEKGDSGGTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGINGKSGKPGLRGRTGPDGN---------NGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRP------GPQGEAGLIGPTG 3675 E G G IG EG TGP G G +G+KGD G G +G G+ G GP G G G+ GP G QGP GERG G DG+ G GP+G IG PG + G G+ G KG +GESG G G SG PGL G+TGP G+ +G+ G +GE G VG GP G G RG RG SGNPG SGPKGSQG++GPIG+EGK G GPKGQKGD GRP GP+GE G++GP G Sbjct: 107 EPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPG---------QSGIPGEIGNKGIRGESGIKGAKGDSGNPGLAGKTGPSGSLGPPGYPGVDGRPGVRGEAGIVGPQGPVGKVGQRGQRGPSGNPGLSGPKGSQGEEGPIGIEGKQGSAGPKGQKGDPGRPGETGDEGPRGERGVVGPAG 334 HSP 5 Score: 56.225 bits (134), Expect = 3.744e-7 Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 3 Query: 4959 NGKSGKPGLRGRTGPDGNNGKQGR------KGEIGDVGLLGPQGLTGPRGLRGSSGNPGD---SGPKGSQGD---QGPIGLE---GKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 5279 GKSGKPG G G DG G G +GE G G +GP+G TGP+G RG +G+ GD +G KGS G+ QGP GL G+ GP G +G G+RG+ G G G +GP G IGP G Sbjct: 75 RGKSGKPGASGIPGKDGTPGSHGVVGPIGPRGEPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPG 196 HSP 6 Score: 56.225 bits (134), Expect = 3.744e-7 Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = -3 Query: 2992 NGKSGKPGLRGRTGPDGNNGKQGR------KGEIGDVGLLGPQGLTGPRGLRGSSGNPGD---SGPKGSQGD---QGPIGLE---GKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 3312 GKSGKPG G G DG G G +GE G G +GP+G TGP+G RG +G+ GD +G KGS G+ QGP GL G+ GP G +G G+RG+ G G G +GP G IGP G Sbjct: 75 RGKSGKPGASGIPGKDGTPGSHGVVGPIGPRGEPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQGPTGERGKQGTDGVPGSLGPQGAIGPPG 196 HSP 7 Score: 53.5286 bits (127), Expect = 1.951e-6 Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 3 Query: 4959 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 5279 +GK G+PG G GP G G +G +G G+ G GPQGL G G+PG GP+GS G QG +G +GP GP G++G +GR G G+ GL G GP G G Sbjct: 699 DGKPGEPGTPGIDGPPGQVGPEGPRGPSGETGEQGPQGLPG------KPGDPGAEGPRGSSGKQG---FQGPTGPIGPTGKQGKQGRAGKSGKNGLTGRKGPAGQRG 796 HSP 8 Score: 53.5286 bits (127), Expect = 1.951e-6 Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = -3 Query: 2992 NGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 3312 +GK G+PG G GP G G +G +G G+ G GPQGL G G+PG GP+GS G QG +G +GP GP G++G +GR G G+ GL G GP G G Sbjct: 699 DGKPGEPGTPGIDGPPGQVGPEGPRGPSGETGEQGPQGLPG------KPGDPGAEGPRGSSGKQG---FQGPTGPIGPTGKQGKQGRAGKSGKNGLTGRKGPAGQRG 796 HSP 9 Score: 52.7582 bits (125), Expect = 3.607e-6 Identity = 46/99 (46.46%), Postives = 52/99 (52.53%), Query Frame = 3 Query: 4989 GRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDGVK 5285 GR G G +GK G G G G G G+ GP G RG G G GP+G G QG GL G G G G KG G PG QG GL GP G +GP G++ Sbjct: 70 GRDGARGKSGKPGASGIPGKDGTPGSHGVVGPIGPRGEPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQ 168 HSP 10 Score: 52.7582 bits (125), Expect = 3.607e-6 Identity = 46/99 (46.46%), Postives = 52/99 (52.53%), Query Frame = -3 Query: 2986 GRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDGVK 3282 GR G G +GK G G G G G G+ GP G RG G G GP+G G QG GL G G G G KG G PG QG GL GP G +GP G++ Sbjct: 70 GRDGARGKSGKPGASGIPGKDGTPGSHGVVGPIGPRGEPGLAGSIGPEGGTGPQGNRGLTGDKGDIGLAGLKGSNGEPGLQGPQGLRGPAGRVGPAGIQ 168
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15036469 (dd_smedV4_1070_0_1|m.1593|m.7941) HSP 1 Score: 168.318 bits (425), Expect = 2.105e-41 Identity = 89/225 (39.56%), Postives = 130/225 (57.78%), Query Frame = 3 Query: 7482 VVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXXR--KSKFGLTIEEVCF 8150 ++ DDP A+ LGN+AI P GT PAR+C L+ NP+ PDG YWIDPNGG+ DAV+V+CKI E+KTCIKPL +I ++ W ++ I YS+ Q+ FLK+ S+ A+Q IT C N P+I N V R+ D+D I+ + Y V++D CQ++ + + +E+ + LPI+DI ++ +N R +S+ IEEVCF Sbjct: 1078 IIQADDPLIAKYLGNDAISKPLGTSNSPARSCLHLAEMNPSFPDGIYWIDPNGGKIDDAVQVYCKIKEKKTCIKPLVFKIQLQKPK------FNWFSQSNDNKFISYSLDQQQMTFLKMISNKASQFITINCRNMPVI-----KNSVKPLRIFTDNDIILDSSDQIFSYKVLEDNCQHNSQDLSSTRLEITSRPTRLPIKDIEVDTVNVRSERSQIEYNIEEVCF 1291 HSP 2 Score: 168.318 bits (425), Expect = 2.105e-41 Identity = 89/225 (39.56%), Postives = 130/225 (57.78%), Query Frame = -3 Query: 121 VVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWNSPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXNR--KSKFGLTIEEVCF 789 ++ DDP A+ LGN+AI P GT PAR+C L+ NP+ PDG YWIDPNGG+ DAV+V+CKI E+KTCIKPL +I ++ W ++ I YS+ Q+ FLK+ S+ A+Q IT C N P+I N V R+ D+D I+ + Y V++D CQ++ + + +E+ + LPI+DI ++ +N R +S+ IEEVCF Sbjct: 1078 IIQADDPLIAKYLGNDAISKPLGTSNSPARSCLHLAEMNPSFPDGIYWIDPNGGKIDDAVQVYCKIKEKKTCIKPLVFKIQLQKPK------FNWFSQSNDNKFISYSLDQQQMTFLKMISNKASQFITINCRNMPVI-----KNSVKPLRIFTDNDIILDSSDQIFSYKVLEDNCQHNSQDLSSTRLEITSRPTRLPIKDIEVDTVNVRSERSQIEYNIEEVCF 1291 HSP 3 Score: 61.6178 bits (148), Expect = 7.450e-9 Identity = 54/111 (48.65%), Postives = 64/111 (57.66%), Query Frame = 3 Query: 4956 INGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIG 5270 +NG G G G G G +G G KGE G +GLLGPQGL+GP GL+GS G PG G KG++G GP+G G G G +G+ G G PGPQG GL G GP G Sbjct: 237 VNGAPGPIGQPGIMGSRGKDGPIGIKGENGPLGLLGPQGLSGPPGLQGSLGPPGPQGSKGNEGKIGPVGPAGSPGSPGLIGEIGERGENGPFGNPGPQGPRGLRGSAGPKG 347 HSP 4 Score: 61.6178 bits (148), Expect = 7.450e-9 Identity = 54/111 (48.65%), Postives = 64/111 (57.66%), Query Frame = -3 Query: 3001 INGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGK------SGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIG 3315 +NG G G G G G +G G KGE G +GLLGPQGL+GP GL+GS G PG G KG++G GP+G G G G +G+ G G PGPQG GL G GP G Sbjct: 237 VNGAPGPIGQPGIMGSRGKDGPIGIKGENGPLGLLGPQGLSGPPGLQGSLGPPGPQGSKGNEGKIGPVGPAGSPGSPGLIGEIGERGENGPFGNPGPQGPRGLRGSAGPKG 347
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15029208 (SmedSxlregen_c102983_g1_i1|m.43148|m.11576) HSP 1 Score: 153.295 bits (386), Expect = 9.712e-37 Identity = 104/299 (34.78%), Postives = 159/299 (53.18%), Query Frame = 3 Query: 7293 QGPVGITGPRGDPG---------IPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWN-SPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXXR-KSKFGLTIEEVCFS* 8156 QG VG TG +G PG +PG GP GL P P + +R+ + ++ DD A + LG++ +K P GTK++PARTCKQL NPN+ DG Y+IDPNGG+ DA +V C+ +++CI+P + ++ W+ S +T+ +W + + + Y I QL FLK++S A QRIT C ++G+ E + V+ L +D D + KY+VI+D C+ S + +E+ A LPIRDI +N +++ + +FGL I +VCFS* Sbjct: 1038 QGSVGPTGTKGFPGENGSPGPVGMPGRDGPAGLP-----------GPVGNTGPPGPPGPPAVFFPVRTVRRDLLN-DDALAVKYLGSDVVKKPLGTKDIPARTCKQLLDANPNLQDGFYYIDPNGGKADDAFRVLCRSQRKESCIEPKSPSYKLKHWDASDVTEYRSWFGEITGTFKFDYQIEASQLMFLKLFSTNARQRITINCSRLSVVGNSE--HPVI---LYSDHDEEVLRNGDLFKYSVIRDGCKNSAEIIDSTELEMDTEAIRLPIRDIALNTGSSKEQQQFGLDIGQVCFS* 1319 HSP 2 Score: 153.295 bits (386), Expect = 9.712e-37 Identity = 104/299 (34.78%), Postives = 159/299 (53.18%), Query Frame = -3 Query: 115 QGPVGITGPRGDPG---------IPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXGIMAMQLRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWN-SPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLLADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXNR-KSKFGLTIEEVCFS* 978 QG VG TG +G PG +PG GP GL P P + +R+ + ++ DD A + LG++ +K P GTK++PARTCKQL NPN+ DG Y+IDPNGG+ DA +V C+ +++CI+P + ++ W+ S +T+ +W + + + Y I QL FLK++S A QRIT C ++G+ E + V+ L +D D + KY+VI+D C+ S + +E+ A LPIRDI +N +++ + +FGL I +VCFS* Sbjct: 1038 QGSVGPTGTKGFPGENGSPGPVGMPGRDGPAGLP-----------GPVGNTGPPGPPGPPAVFFPVRTVRRDLLN-DDALAVKYLGSDVVKKPLGTKDIPARTCKQLLDANPNLQDGFYYIDPNGGKADDAFRVLCRSQRKESCIEPKSPSYKLKHWDASDVTEYRSWFGEITGTFKFDYQIEASQLMFLKLFSTNARQRITINCSRLSVVGNSE--HPVI---LYSDHDEEVLRNGDLFKYSVIRDGCKNSAEIIDSTELEMDTEAIRLPIRDIALNTGSSKEQQQFGLDIGQVCFS* 1319 HSP 3 Score: 52.373 bits (124), Expect = 4.820e-6 Identity = 70/198 (35.35%), Postives = 82/198 (41.41%), Query Frame = 3 Query: 4788 VGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQG-LTGPRGLRGSSGNPGDSGPKGS------------------------QGDQGPIGLEGKSGP---------FGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 5279 +G G G GIVGPPGPEG G GLP G PG G GP G GK+G+ G +G V G G +GPRG G SG PG SGPKG +G++GP G++G GP GP+G G G PG G G IGP G IGP+G Sbjct: 611 IGVPGIPGKPGIVGPPGPEGFKGDKGLP---------------------------------GNPGTPGVIGPQGLRGKRGKAGGLGKVSFTGRSGGQSGPRGKPGPSGKPGTSGPKGVAGPPGPMGEPGPTGPTGPIGSIGLKGERGPNGIDGSIGPPGRNGAPGAVGPQGLIGLPGTPGTTGSVGEIGPPGQIGPNG 775 HSP 4 Score: 52.373 bits (124), Expect = 4.820e-6 Identity = 70/198 (35.35%), Postives = 82/198 (41.41%), Query Frame = -3 Query: 2992 VGERGTHGPDGIVGPPGPEGRIGSPGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXGINGKSGKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQG-LTGPRGLRGSSGNPGDSGPKGS------------------------QGDQGPIGLEGKSGP---------FGPKGQKGDRGRPGPQGEAGLIGPTGPIGPDG 3483 +G G G GIVGPPGPEG G GLP G PG G GP G GK+G+ G +G V G G +GPRG G SG PG SGPKG +G++GP G++G GP GP+G G G PG G G IGP G IGP+G Sbjct: 611 IGVPGIPGKPGIVGPPGPEGFKGDKGLP---------------------------------GNPGTPGVIGPQGLRGKRGKAGGLGKVSFTGRSGGQSGPRGKPGPSGKPGTSGPKGVAGPPGPMGEPGPTGPTGPIGSIGLKGERGPNGIDGSIGPPGRNGAPGAVGPQGLIGLPGTPGTTGSVGEIGPPGQIGPNG 775
BLAST of collagen vs. Smed Unigenes AA
Match: SMU15040144 (dd_smedV4_740_0_1|m.36260|m.3408) HSP 1 Score: 147.517 bits (371), Expect = 4.887e-35 Identity = 114/289 (39.45%), Postives = 166/289 (57.44%), Query Frame = 3 Query: 7296 GPVGITGPRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWN-SPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLL-ADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXXRKSKFGLTIEEVCFS* 8156 GP G TGP G+ G+ +GP G++G+ G +GP G +G GPPGPPGPP ++ + + P + +Y DD AA +LG++ I P GTK++PAR+C L S + ++ DG Y+IDPNGG+ +DA +VFCK+ +TCI P S S++ +PI K + L Y I N QL FLK+ S A Q I AC N ++ K P ++ D++ + L Y VIKDECQ S EAE+++ + + LPIRD+ ++ S+F L + +VCFS* Sbjct: 1043 GPKGPTGPNGEMGL---MGPMGVTGRDGPSGPHGLMGNAGPPGPPGPPAMMLPI-IYDPNR-PMYSDDANAANILGSDTISVPLGTKDLPARSCNHLKSTSSHLKDGTYFIDPNGGKMNDAFEVFCKMETGETCISPKQSSFSKISYSENPINK-YISYGELSGIQRFDYVIDNTQLMFLKMVSTRANQEIKIACNNMAVV------EKTEYPAIIFTDNNRELTKDDHHLSYKVIKDECQNMSSEEAETVLLVSGDSKRLPIRDL-TLGSDSDISEFRLKLSKVCFS* 1318 HSP 2 Score: 147.517 bits (371), Expect = 4.887e-35 Identity = 114/289 (39.45%), Postives = 166/289 (57.44%), Query Frame = -3 Query: 115 GPVGITGPRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXGIMAMQLRSPTKGVVYGDDPAAAELLGNNAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKVFCKISEEKTCIKPLNQEISIRSWN-SPITKGHTWLKSLLNSDEIQYSIPNGQLAFLKIYSDTATQRITFACENHPIIGSEEKLNKVMAPRLL-ADDDTIIKMTQSKLKYTVIKDECQYSKSSEAESIIELKHLASLLPIRDIGXXXXXNRKSKFGLTIEEVCFS* 975 GP G TGP G+ G+ +GP G++G+ G +GP G +G GPPGPPGPP ++ + + P + +Y DD AA +LG++ I P GTK++PAR+C L S + ++ DG Y+IDPNGG+ +DA +VFCK+ +TCI P S S++ +PI K + L Y I N QL FLK+ S A Q I AC N ++ K P ++ D++ + L Y VIKDECQ S EAE+++ + + LPIRD+ ++ S+F L + +VCFS* Sbjct: 1043 GPKGPTGPNGEMGL---MGPMGVTGRDGPSGPHGLMGNAGPPGPPGPPAMMLPI-IYDPNR-PMYSDDANAANILGSDTISVPLGTKDLPARSCNHLKSTSSHLKDGTYFIDPNGGKMNDAFEVFCKMETGETCISPKQSSFSKISYSENPINK-YISYGELSGIQRFDYVIDNTQLMFLKMVSTRANQEIKIACNNMAVV------EKTEYPAIIFTDNNRELTKDDHHLSYKVIKDECQNMSSEEAETVLLVSGDSKRLPIRDL-TLGSDSDISEFRLKLSKVCFS* 1318 HSP 3 Score: 59.3066 bits (142), Expect = 3.677e-8 Identity = 49/100 (49.00%), Postives = 58/100 (58.00%), Query Frame = 3 Query: 4971 GKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIG 5270 GKPG G+ G G +GK G GE G G +GPQGL GP G +G G PGD G G +G G +G +G GP GP G G+ G GP G G GP+GP G Sbjct: 974 GKPGKPGKEGKPGKDGKTGPVGEPGHPGWMGPQGLLGPPGPQGDRGKPGDPGSPGIEGSPGDVGDQGVPGPKGPTGPNGEMGLMGPMGVTGRDGPSGPHG 1073 HSP 4 Score: 59.3066 bits (142), Expect = 3.677e-8 Identity = 49/100 (49.00%), Postives = 58/100 (58.00%), Query Frame = -3 Query: 3001 GKPGLRGRTGPDGNNGKQGRKGEIGDVGLLGPQGLTGPRGLRGSSGNPGDSGPKGSQGDQGPIGLEGKSGPFGPKGQKGDRGRPGPQGEAGLIGPTGPIG 3300 GKPG G+ G G +GK G GE G G +GPQGL GP G +G G PGD G G +G G +G +G GP GP G G+ G GP G G GP+GP G Sbjct: 974 GKPGKPGKEGKPGKDGKTGPVGEPGHPGWMGPQGLLGPPGPQGDRGKPGDPGSPGIEGSPGDVGDQGVPGPKGPTGPNGEMGLMGPMGVTGRDGPSGPHG 1073 The following BLAST results are available for this feature:
BLAST of collagen vs. RefSeq Human
Analysis Date: 2016-03-08 (Girardia Sp. BLASTX Human) Total hits: 5
BLAST of collagen vs. uniprot
Analysis Date: 2016-03-08 (Girardia Sp. BLASTX Swissprot Uniprot) Total hits: 5
BLAST of collagen vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-09 (Girardia Sp. BLASTX Drosophila melanogaster) Total hits: 5
BLAST of collagen vs. Smed Unigenes AA
Analysis Date: 2016-03-09 (Girardia Sp. BLASTX Schmidtea mediterranea) Total hits: 5
Sequences
The following sequences are available for this feature:
mRNA sequence >Gsp_012135 ID=Gsp_012135|Name=collagen|organism=Girardia sp.|type=mRNA|length=8270bp Design Primers for collagen back to top protein sequence >Gsp_012135-protein ID=Gsp_012135-protein|Name=collagen|organism=Girardia sp.|type=polypeptide|length=1286bpback to top coding sequence >Gsp_012135.4299.8156 ID=Gsp_012135.4299.8156|Name=Gsp_012135.4299.8156|organism=Girardia sp.|type=CDS|length=3858bpback to top Gene Groups
collagen is similar in sequence to the genes of this group: GG1008
Gene Group Protein Sequences >SMU15002271 |