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Overview
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of Gsp_004346 vs. RefSeq Human
Match: gi|188528648|ref|NP_061978.6| (tenascin-X isoform 1 precursor [Homo sapiens]) HSP 1 Score: 54.299 bits (129), Expect = 1.014e-6 Identity = 112/460 (24.35%), Postives = 145/460 (31.52%), Query Frame = 2
Query: 266 CEKDDQCFSGVCLSMGNL--KFCSKETKVQKKVAERGRCREDSNCFSGYCIPIKPNSEMKFCAKDSLLAGFIGSGGICNEDKQCNSGYCVQVAGTT------KHCSKDSRRQGLIGQGGPCLKDSQCFSGVCF---KYRGQNVCARESKKPGFVGSGGRCKKNE-QCFSNYCVEDKITKKKFCAKASRYQKLVGGGGQCTEDKMCFSGVCVLLGNMQVCAKDSKSSNLVGGGGACRRHVECFSGLCVKRDNGKVGFCSKDSSVIKLIGGGGICKNNGQCFSRYCYKVDAET------KICAKDSKFKGKVGGGGPCKNDFFCASNLCHELNGVKYCVQESKQK-----------VGYIGEGSL-------CKSHHSCYSGYC---VKVGNEGFCAKESLKSEKVGGGGP--CVRDWQCYSRYCFTNGKLKYCAKDGKQFGEVGISGPCRRNKDCSSGRCV 1522
C + +C G C+ + CS T + RGRC ED C + + D G G CN+ +C G CV G T + C +D R +G +C +GVC Y G++ R PG GRC+ C+ Y D T+ C G C C G CV N +D S G CR H C G+CV G+ +D S GG C+ GQC C D + + C D G V G C C E ++ C + GY G C+ C G C V G E +E S GG GP R QC C + CA G CR +C G CV
Sbjct: 346 CGEGGRCVDGRCVCWPGYTGEDCSTRT-CPRDCRGRGRC-EDGECIC----------DTGYSGDD---CGVRSCPGDCNQRGRCEDGRCVCWPGYTGTDCGSRACPRDCRGRG------------RCENGVCVCNAGYSGEDCGVRSC--PGDCRGRGRCESGRCMCWPGYTGRDCGTRA--CP------------GDCRGRGRCVDGRCVC--NPGFTGEDCGSRRCPGD---CRGHGLCEDGVCV----CDAGYSGEDCSTRSCPGG---CRGRGQCLDGRCVCEDGYSGEDCGVRQCPNDCSQHG-VCQDGVC----ICWEGYVSEDCSIRTCPSNCHGRGRCEEGRCLCDPGYTGPTCATRMCPADCRGRGRCVQGVCLCHVGYGGEDCGQEEPPASACPGGCGPRELCRAGQC---VCVEGFRGPDCAIQ-------TCPGDCRGRGECHDGSCV 735
BLAST of Gsp_004346 vs. uniprot
Match: gi|857434950|sp|P22105|TENX_HUMAN (RecName: Full=Tenascin-X; Short=TN-X; AltName: Full=Hexabrachion-like protein; Flags: Precursor) HSP 1 Score: 54.299 bits (129), Expect = 2.686e-6 Identity = 112/460 (24.35%), Postives = 145/460 (31.52%), Query Frame = 2
Query: 266 CEKDDQCFSGVCLSMGNL--KFCSKETKVQKKVAERGRCREDSNCFSGYCIPIKPNSEMKFCAKDSLLAGFIGSGGICNEDKQCNSGYCVQVAGTT------KHCSKDSRRQGLIGQGGPCLKDSQCFSGVCF---KYRGQNVCARESKKPGFVGSGGRCKKNE-QCFSNYCVEDKITKKKFCAKASRYQKLVGGGGQCTEDKMCFSGVCVLLGNMQVCAKDSKSSNLVGGGGACRRHVECFSGLCVKRDNGKVGFCSKDSSVIKLIGGGGICKNNGQCFSRYCYKVDAET------KICAKDSKFKGKVGGGGPCKNDFFCASNLCHELNGVKYCVQESKQK-----------VGYIGEGSL-------CKSHHSCYSGYC---VKVGNEGFCAKESLKSEKVGGGGP--CVRDWQCYSRYCFTNGKLKYCAKDGKQFGEVGISGPCRRNKDCSSGRCV 1522
C + +C G C+ + CS T + RGRC ED C + + D G G CN+ +C G CV G T + C +D R +G +C +GVC Y G++ R PG GRC+ C+ Y D T+ C G C C G CV N +D S G CR H C G+CV G+ +D S GG C+ GQC C D + + C D G V G C C E ++ C + GY G C+ C G C V G E +E S GG GP R QC C + CA G CR +C G CV
Sbjct: 346 CGEGGRCVDGRCVCWPGYTGEDCSTRT-CPRDCRGRGRC-EDGECIC----------DTGYSGDD---CGVRSCPGDCNQRGRCEDGRCVCWPGYTGTDCGSRACPRDCRGRG------------RCENGVCVCNAGYSGEDCGVRSC--PGDCRGRGRCESGRCMCWPGYTGRDCGTRA--CP------------GDCRGRGRCVDGRCVC--NPGFTGEDCGSRRCPGD---CRGHGLCEDGVCV----CDAGYSGEDCSTRSCPGG---CRGRGQCLDGRCVCEDGYSGEDCGVRQCPNDCSQHG-VCQDGVC----ICWEGYVSEDCSIRTCPSNCHGRGRCEEGRCLCDPGYTGPTCATRMCPADCRGRGRCVQGVCLCHVGYGGEDCGQEEPPASACPGGCGPRELCRAGQC---VCVEGFRGPDCAIQ-------TCPGDCRGRGECHDGSCV 735
BLAST of Gsp_004346 vs. Smed Unigenes AA
Match: SMU15000337 (Asxlregen_comp45583_c0_seq1|m.3077|m.30111) HSP 1 Score: 791.186 bits (2042), Expect = 0.000e+0 Identity = 394/520 (75.77%), Postives = 447/520 (85.96%), Query Frame = 2
Query: 53 FVFMSSYFV-TLFLAVTACLYLHVTVAVVRPGGFRCQRDYECASKFCVKSTKRWFCSPQSRNRRGTIAGGGICEKDDQCFSGVCLSMGNLKFCSKETKVQKKVAERGRCREDSNCFSGYCIPIKPNSEMKFCAKDSLLAGFIGSGGICNEDKQCNSGYCVQVAGTTKHCSKDSRRQGLIGQGGPCLKDSQCFSGVCFKYRGQNVCARESKKPGFVGSGGRCKKNEQCFSNYCVEDKITKKKFCAKASRYQKLVGGGGQCTEDKMCFSGVCVLLGNMQVCAKDSKSSNLVGGGGACRRHVECFSGLCVKRDNGKVGFCSKDSSVIKLIGGGGICKNNGQCFSRYCYKVDAETKICAKDSKFKGKVGGGGPCKNDFFCASNLCHELNGVKYCVQESKQKVGYIGEGSLCKSHHSCYSGYCVKVGNEGFCAKESLKSEKVGGGGPCVRDWQCYSRYCFTNGKLKYCAKDGKQFGEVGISGPCRRNKDCSSGRCVSMKTKLADGTESKVKVCQNPKKKDNPLYN 1609
+ M+SY + +F A + Y+H T AVVRPGG++CQ++ +CASKFCVK TKRWFC+PQSRN RG IAGGGICE DDQCFSGVCL+MG+ KFCSKETK+Q KVAERGRCREDSNCFSG+C P++ NS MKFCAKDSL+AG IG GGIC D QC+SG+CVQVAG T+HCSKDSRR GL+GQGGPC D+QCFSGVCFK++GQ VCARESKK G VGSGGRC K+EQCFSN+CV+D++ K KFCAK SR KLVGGGGQC DKMCFSGVCV LG MQVCAKDSK +N+VGGGGACRRHVECFSGLCVK++N K+GFCSKDSS+ K IGGGGIC+NN QCFSRYC+KVDA+TKICAKDSKF+GKV GGGPC +DF+CASN CH+ NG KYCVQES QK GYI EG C +HH CYSGYCVK+G E FCAKES K EK+GGGGPCVRDWQC+SRYC+ NGKLKYCAKDG++FGEVGISGPCRRNKDCSS RCVSMKTK +GTE VKVCQN KK+ NPLYN
Sbjct: 33 LIVMNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRYCYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEGTVKVCQNSKKQKNPLYN 552 The following BLAST results are available for this feature:
BLAST of Gsp_004346 vs. RefSeq Human
Analysis Date: 2016-03-08 (Girardia Sp. BLASTX Human) Total hits: 1
BLAST of Gsp_004346 vs. uniprot
Analysis Date: 2016-03-08 (Girardia Sp. BLASTX Swissprot Uniprot) Total hits: 1
BLAST of Gsp_004346 vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-09 (Girardia Sp. BLASTX Drosophila melanogaster) Total hits: 0
BLAST of Gsp_004346 vs. Smed Unigenes AA
Analysis Date: 2016-03-09 (Girardia Sp. BLASTX Schmidtea mediterranea) Total hits: 1
Sequences
The following sequences are available for this feature:
mRNA sequence >Gsp_004346 ID=Gsp_004346|Name=Gsp_004346|organism=Girardia sp.|type=mRNA|length=1703bp Design Primers for Gsp_004346 back to top protein sequence >Gsp_004346-protein ID=Gsp_004346-protein|Name=Gsp_004346|organism=Girardia sp.|type=polypeptide|length=519bpback to top coding sequence >Gsp_004346.62.1618 ID=Gsp_004346.62.1618|Name=Gsp_004346.62.1618|organism=Girardia sp.|type=CDS|length=1557bpback to top Gene Groups
Gsp_004346 is similar in sequence to the genes of this group: GG2694
Gene Group Protein Sequences >SMU15000337 |