Overview
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of Ddo_006968 vs. uniprot
Match: gi|857434950|sp|P22105|TENX_HUMAN (RecName: Full=Tenascin-X; Short=TN-X; AltName: Full=Hexabrachion-like protein; Flags: Precursor) HSP 1 Score: 59.3066 bits (142), Expect = 9.498e-8 Identity = 105/459 (22.88%), Postives = 148/459 (32.24%), Query Frame = 3 Query: 357 ERGRC-REDSNCFSGFCVPIRPDSDMKFCAKDSLVKDKVGSGGICKTDDQCYCGYCVQVAGMT-KHCSQDS--RVINKIG--QGGPCKSD-----DQCFSGVCFKHRGQKVCAKESKKMNLVGSGGR----------CYKNGQCFSNYCILDPIRKIKFCAKSSRYKNFVGGGGQCTEDK-MCFSGVCAKLGSMKVCAKDSKFQSQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLLIGGGGICRNIQQCFSRYCYVVDGKT------KICAKDSKFRGKVGGG-------------------GPCKTDNHCASNFCH---NLNGKKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEKIGG---GGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVSGPCRKNKDCSSGRCVSMKSKLADGTESRVKVCQN 1574 ++GRC R CF G+ P C S D C+ +C G CV AG + CSQ S R ++ G +GG C D D C C + Q+ + + + G G C + G+C C+ DP + C S + G GG+C + + +C+ G + S + C +D CR C G C+ D G+ D VR G C +C C G T + C +D + RG+ G G C+ C S C G+ + P C+ C G CV F E G G C+ + C G C + G G CR C GRCV G + V+ C N Sbjct: 193 DQGRCVRGRCVCFPGYTGPS--------CGWPSCPGD-------CQGRGRCVQGVCVCRAGFSGPDCSQRSCPRGCSQRGRCEGGRCVCDPGYTGDDCGMRSCPRGCSQRGRCENGRCVCNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWD-CGEGGRCVDGRCVCWPGYTGEDCSTRTCPRD------------CRGRGRCEDGECI----CDTGYSGDDCGVRSCPGD---CNQRGRCEDGRCVCWPGYTGTDCGSRACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCRGRGRCESGRCMCWPGYTGRDCGTRACPGD---------CRGRGRCVDGRCV--------CNPGFTGEDCGSRRCPGDCRGHGLCEDGVCVCDA-----GYSGEDCSTRSCPGGCRGRGQCLDGRCVCEDG--YSGEDCGVRQCPN 592 HSP 2 Score: 56.9954 bits (136), Expect = 3.985e-7 Identity = 98/405 (24.20%), Postives = 142/405 (35.06%), Query Frame = 3 Query: 357 ERGRCREDSNCFSGFCVPIRPDSDMKFCAKDSLVKDKVGSGGICKTDDQCYCGYCVQVAGMT------KHCSQDSRVINKIGQGGPCKSDDQCFSGVCFKHRGQKVCAKESKKMNLVGSGGRCYKNGQCFSNYCILDPIRKIKFCAKSSRYKNFVGGGGQCTEDKMCFSGVCAKLGSMKVCAKDSKFQSQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLL---IGGGGICRN-IQQCFSRYCYVVDGKTKICAKDSKFRGKVGGG----GPCKTDNHCASNFC-HNLNGKKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEKIGGGGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVS---GPCRKNKDCSSGRCV 1517 +RGRC ED C C P +D C + +D C+ +C G CV AG + + C D R G+G C+ G + G + C G C G+C C+ +P + C S R G G C ED +C VC S + C+ S G CR C G CV +D G+ +D VR G+C++ + C+ Y D + C + RG+ G P T CA+ C + G+ C+Q +C H+ Y G C +E GG C C +G C C +G++ + + G CR +C G CV Sbjct: 410 QRGRC-EDGRCV---CWPGYTGTD---CGSRACPRD-------CRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCR-----GRGRCESGRCMCWPGYTGRDCGTRACP------------GDCRGRGRCVDGRCVCNPGFTGEDCG-SRRCPGDCRGHGLC-EDGVC---VCDAGYSGEDCSTRS-------CPGGCRGRGQCLDGRCVCED----GYSGEDCGVRQCPNDCSQHGVCQDGVCICWEGYV-SEDCSIRTCPSNCHGRGRCEEGRCLCDPGYTGPTCATRMCPADCRGRGRCVQ------------GVCLCHVG-YGG--------EDCGQEEPPASACPGG--CGPRELCRAGQCV-------CV-EGFRGPDCAIQTCPGDCRGRGECHDGSCV 735
BLAST of Ddo_006968 vs. Smed Unigenes AA
Match: SMU15000337 (Asxlregen_comp45583_c0_seq1|m.3077|m.30111) HSP 1 Score: 713.375 bits (1840), Expect = 0.000e+0 Identity = 363/539 (67.35%), Postives = 429/539 (79.59%), Query Frame = 3 Query: 18 LSNLILFSTFI------FIMNTYLTILLFGCLLN-FCIYQTSGILLPGGYRCKSDSDCASAFCVQAKIRWYCAPNSRNGRKSIAEGGICEKDDQCFSGVCLEMGKFKFCSKESKIRNKVAERGRCREDSNCFSGFCVPIRPDSDMKFCAKDSLVKDKVGSGGICKTDDQCYCGYCVQVAGMTKHCSQDSRVINKIGQGGPCKSDDQCFSGVCFKHRGQKVCAKESKKMNLVGSGGRCYKNGQCFSNYCILDPIRKIKFCAKSSRYKNFVGGGGQCTEDKMCFSGVCAKLGSMKVCAKDSKFQSQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLLIGGGGICRNIQQCFSRYCYVVDGKTKICAKDSKFRGKVGGGGPCKTDNHCASNFCHNLNGKKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEKIGGGGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVSGPCRKNKDCSSGRCVSMKSKLADGTESRVKVCQNSKKKKENPFKN*I 1613 +S+ I F FI +MN+YL ++F + + I++T ++ PGGY+C+ + DCAS FCV+ RW+CAP SRNGR IA GGICE DDQCFSGVCL MG FKFCSKE+KI+NKVAERGRCREDSNCFSGFC P+R +S MKFCAKDSL+ K+G GGICK D+QC+ G+CVQVAG+T+HCS+DSR I +GQGGPC++D QCFSGVCFKH+GQ VCA+ESKK LVGSGGRC K+ QCFSN+C+ D + K KFCAK SR VGGGGQC DKMCFSGVC LG+M+VCAKDSKF + VGGGG+CRR+ CFSG CVK++N GFCSKDSS+ IGGGGICRN QCFSRYC+ VD KTKICAKDSKFRGKV GGGPC +D +CASNFCH+ NG K+C+QES QK G++ EG C +H CYSGYCVK+ ESFCAKES ++EKIGGGGPC +WQCFS YCY NGKLKYCAKDG +FGE+G+SGPCR+NKDCSS RCVSMK+K +GTE VKVCQNSKK+K NP N I Sbjct: 17 ISSRISFVIFIQLHHQLIVMNSYLLWIIFTAAFSIYYIHRTEAVVRPGGYKCQKNEDCASKFCVKVTKRWFCAPQSRNGRGKIAGGGICEADDQCFSGVCLNMGSFKFCSKETKIQNKVAERGRCREDSNCFSGFCNPVRSNSTMKFCAKDSLIAGKIGGGGICKNDNQCHSGFCVQVAGITRHCSKDSRRIGLVGQGGPCQNDAQCFSGVCFKHQGQMVCARESKKKGLVGSGGRCIKDEQCFSNFCVKDRLGKYKFCAKVSRNPKLVGGGGQCLHDKMCFSGVCVTLGTMQVCAKDSKFNNIVGGGGACRRHVECFSGLCVKQENTKIGFCSKDSSIFKSIGGGGICRNNAQCFSRYCHKVDAKTKICAKDSKFRGKVAGGGPCNSDFYCASNFCHDNNGTKYCVQESSQKPGYIAEGGFCVNHHLCYSGYCVKIGKESFCAKESKKIEKIGGGGPCVRDWQCFSRYCYFNGKLKYCAKDGQRFGEVGISGPCRRNKDCSSSRCVSMKTKSVNGTEGTVKVCQNSKKQK-NPLYNTI 554
BLAST of Ddo_006968 vs. RefSeq Human
Match: gi|188528648|ref|NP_061978.6| (tenascin-X isoform 1 precursor [Homo sapiens]) HSP 1 Score: 59.3066 bits (142), Expect = 3.585e-8 Identity = 105/459 (22.88%), Postives = 148/459 (32.24%), Query Frame = 3 Query: 357 ERGRC-REDSNCFSGFCVPIRPDSDMKFCAKDSLVKDKVGSGGICKTDDQCYCGYCVQVAGMT-KHCSQDS--RVINKIG--QGGPCKSD-----DQCFSGVCFKHRGQKVCAKESKKMNLVGSGGR----------CYKNGQCFSNYCILDPIRKIKFCAKSSRYKNFVGGGGQCTEDK-MCFSGVCAKLGSMKVCAKDSKFQSQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLLIGGGGICRNIQQCFSRYCYVVDGKT------KICAKDSKFRGKVGGG-------------------GPCKTDNHCASNFCH---NLNGKKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEKIGG---GGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVSGPCRKNKDCSSGRCVSMKSKLADGTESRVKVCQN 1574 ++GRC R CF G+ P C S D C+ +C G CV AG + CSQ S R ++ G +GG C D D C C + Q+ + + + G G C + G+C C+ DP + C S + G GG+C + + +C+ G + S + C +D CR C G C+ D G+ D VR G C +C C G T + C +D + RG+ G G C+ C S C G+ + P C+ C G CV F E G G C+ + C G C + G G CR C GRCV G + V+ C N Sbjct: 193 DQGRCVRGRCVCFPGYTGPS--------CGWPSCPGD-------CQGRGRCVQGVCVCRAGFSGPDCSQRSCPRGCSQRGRCEGGRCVCDPGYTGDDCGMRSCPRGCSQRGRCENGRCVCNPGYTGEDCGVRSCPRGCSQRGRCKDGRCVCDPGYTGEDCGTRSCPWD-CGEGGRCVDGRCVCWPGYTGEDCSTRTCPRD------------CRGRGRCEDGECI----CDTGYSGDDCGVRSCPGD---CNQRGRCEDGRCVCWPGYTGTDCGSRACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCRGRGRCESGRCMCWPGYTGRDCGTRACPGD---------CRGRGRCVDGRCV--------CNPGFTGEDCGSRRCPGDCRGHGLCEDGVCVCDA-----GYSGEDCSTRSCPGGCRGRGQCLDGRCVCEDG--YSGEDCGVRQCPN 592 HSP 2 Score: 56.9954 bits (136), Expect = 1.504e-7 Identity = 98/405 (24.20%), Postives = 142/405 (35.06%), Query Frame = 3 Query: 357 ERGRCREDSNCFSGFCVPIRPDSDMKFCAKDSLVKDKVGSGGICKTDDQCYCGYCVQVAGMT------KHCSQDSRVINKIGQGGPCKSDDQCFSGVCFKHRGQKVCAKESKKMNLVGSGGRCYKNGQCFSNYCILDPIRKIKFCAKSSRYKNFVGGGGQCTEDKMCFSGVCAKLGSMKVCAKDSKFQSQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLL---IGGGGICRN-IQQCFSRYCYVVDGKTKICAKDSKFRGKVGGG----GPCKTDNHCASNFC-HNLNGKKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEKIGGGGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVS---GPCRKNKDCSSGRCV 1517 +RGRC ED C C P +D C + +D C+ +C G CV AG + + C D R G+G C+ G + G + C G C G+C C+ +P + C S R G G C ED +C VC S + C+ S G CR C G CV +D G+ +D VR G+C++ + C+ Y D + C + RG+ G P T CA+ C + G+ C+Q +C H+ Y G C +E GG C C +G C C +G++ + + G CR +C G CV Sbjct: 410 QRGRC-EDGRCV---CWPGYTGTD---CGSRACPRD-------CRGRGRCENGVCVCNAGYSGEDCGVRSCPGDCR-----GRGRCESGRCMCWPGYTGRDCGTRACP------------GDCRGRGRCVDGRCVCNPGFTGEDCG-SRRCPGDCRGHGLC-EDGVC---VCDAGYSGEDCSTRS-------CPGGCRGRGQCLDGRCVCED----GYSGEDCGVRQCPNDCSQHGVCQDGVCICWEGYV-SEDCSIRTCPSNCHGRGRCEEGRCLCDPGYTGPTCATRMCPADCRGRGRCVQ------------GVCLCHVG-YGG--------EDCGQEEPPASACPGG--CGPRELCRAGQCV-------CV-EGFRGPDCAIQTCPGDCRGRGECHDGSCV 735 HSP 3 Score: 51.6026 bits (122), Expect = 7.470e-6 Identity = 83/359 (23.12%), Postives = 121/359 (33.70%), Query Frame = 3 Query: 486 CKTDDQCYCGYCVQVAGMT-KHCSQDSRVINKIGQGGPCKSDDQCFSGVCFKHRG-------QKVCAKESKKMNLVGSGGRCYKNGQCFSNYCILDPIRKIKFCAKSSRYKNFVGGGGQCTEDKMCFSGVCAKLGSMKVCAKDSKFQSQVGGGGSCRRNENCFSGYCVKKDNMDFGFCSKDSSVRLL---IGGGGICRNIQQCFSRYCYV-VDGKTKICAKDSKFRGKVGGGGPCKTDNHCASNFCHNLNGKKFCIQESPQKVGFVGEGSLCKSHLSCYSGYCVKMKNESFCAKESFRMEKIGGGGPCQYNWQCFSGYCYTNGKLKYCAKDGYKFGEIGVS---GPCRKNKDCSSGRCV 1517 C +C G CV G T C S G C+ +C GVC G Q+ C + C + G+C C+ DP C S + C++ C +G C + + +D +S G C + C G CV D G+ +D R G GG C + +C Y D T+ C +D + RG+ G C D + + C G + C + Q+ G C+ GY C ++ C+ +C +G C N GY + GV G CR C SGRC+ Sbjct: 191 CNDQGRCVRGRCVCFPGYTGPSCGWPS-------CPGDCQGRGRCVQGVCVCRAGFSGPDCSQRSCPRG------------CSQRGRCEGGRCVCDPGYTGDDCGMRSCPRG-------CSQRGRCENGRC--VCNPGYTGEDCGVRSCPRG---CSQRGRCKDGRCV----CDPGYTGEDCGTRSCPWDCGEGGRCVD-GRCVCWPGYTGEDCSTRTCPRDCRGRGRCEDG-ECICDTGYSGDDC----GVRSCPGDCNQR------GRCEDGRCVCWPGYTGTDCGSRACPRD------------CRGRGRCENGVCVCNA--------GYSGEDCGVRSCPGDCRGRGRCESGRCM 482 The following BLAST results are available for this feature:
BLAST of Ddo_006968 vs. uniprot
Analysis Date: 2016-03-07 (Dugesia dorotocephala BLASTX Swissprot Uniprot) Total hits: 1
BLAST of Ddo_006968 vs. Smed Unigenes AA
Analysis Date: 2016-03-08 (Dugesia dorotocephala BLASTX Schmidtea mediterranea) Total hits: 1
BLAST of Ddo_006968 vs. RefSeq Human
Analysis Date: 2016-03-08 (Dugesia dorotocephala BLASTX Human) Total hits: 1
BLAST of Ddo_006968 vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-08 (Dugesia dorotocephala BLASTX Drosophila melanogaster) Total hits: 0
Sequences
The following sequences are available for this feature:
mRNA sequence >Ddo_006968 ID=Ddo_006968|Name=Ddo_006968|organism=Dugesia dorotocephala|type=mRNA|length=1706bp Design Primers for Ddo_006968 back to top protein sequence >Ddo_006968-protein ID=Ddo_006968-protein|Name=Ddo_006968|organism=Dugesia dorotocephala|type=polypeptide|length=536bpback to top coding sequence >Ddo_006968.3.1610 ID=Ddo_006968.3.1610|Name=Ddo_006968.3.1610|organism=Dugesia dorotocephala|type=CDS|length=1608bpback to top Gene Groups
Ddo_006968 is similar in sequence to the genes of this group: GG2694
Gene Group Protein Sequences >SMU15000337 |