Overview
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Homology
BLAST of ifb vs. uniprot
Match: gi|266617|sp|Q01241|NF70_DORPE (RecName: Full=70 kDa neurofilament protein; Short=NF70 [Doryteuthis pealeii]) HSP 1 Score: 376.711 bits (966), Expect = 1.502e-119 Identity = 234/558 (41.94%), Postives = 365/558 (65.41%), Query Frame = 1 Query: 223 SYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKD-ASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRK----DAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQIT-NVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAELSESN--WGTGAQILTTLQNSKGEEKATHTQRTVYQ 1872 SYG +A PG NI GVN++ RE+EK ++++LN+RFANYI+KVR LE +NK+L+ EL +LK +WGKET+ IK +Y+ ++ RK +D K L++R+ + D ++ Q +L + H D+E I + QL+D E EIS LRR + LE+EK+R + + ++ +E+ +++ DL+ ET+ H+ A+N Q+L +++EF K + E++EL++L Y+D +++++FWRNE+AQA+RDIQ EYD K + ++ ++EA Y LK+QEFRT TK++ E + +EEN +LK + E+RNRL +LE RN LER L R+++EK R+ E E ++E+ + E+E+I+ ELQ L+D KLSLELEIAAYRK+LEGEE RV K ++ + L+ +TRS + T +QI+ +++GE++AKT++QRT+KG+V+I+E G FI LE ++E+++G+ + R D+ + V Y IP ++ TG KIW+K + Q + +S N WGTG+ ++T LQN KGE+KA +TQ TVYQ Sbjct: 68 SYGATAMPGRYANISSTGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGMKQIVEQVVGARPNEAEVLSTILTRSEGGYEATGD---SQISMKMMRGELAAKTTYQRTSKGSVSIKEADSQGCFIALET--KKEENLTGWKIVRKVDDNK-VYTYEIP--NLVLKTGT--VVKIWSKNHQAQARGDDLVSRENDTWGTGSNVVTILQNEKGEDKANYTQNTVYQ 615
BLAST of ifb vs. uniprot
Match: gi|124235|sp|P23731|IFEB_ASCSU (RecName: Full=Intermediate filament protein B; Short=IF-B [Ascaris suum]) HSP 1 Score: 325.479 bits (833), Expect = 2.377e-100 Identity = 212/598 (35.45%), Postives = 348/598 (58.19%), Query Frame = 1 Query: 88 YSVLAQSNIQPISGPRNVVITRTGPTIA-ATGNQGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGEEKATHTQRTV 1866 Y + +S IQP R V T++ + A +TG R+++M G ++ G S + N + + +KEK E+Q LNDR NYID+V+ LE++N++L +L +L+ +WGK+T+ IK Y + + RK +D KA++++++ + D + E + DV SD+E I++ + + D + E+ LR R L EE+ R N + R+ EE+ + + DLD+ETL I QN+VQ+L++++EFL+++ E E++EL +L+ + +D+++F++NE+A A+RDI++EYD + + +ME+ Y LK+ E + + + + E+ REE R+++ + ++R +L +LE +N LE+ + L ++++ R++E+ L + E + +V ELQ LLD K L+ EIA YRKMLEGEE RV + M + T T V+GE+S KT+FQR+AKGNVTI EC P+GKFI LENT S+ E++ + L R DN R ++ Y IP T+L+ R KI+A+ Q + L E+ WG GA ++T+L N G+E+ATHTQ+T+ Sbjct: 11 YEIAYRSTIQP----RTAVRTQSRQSGAYSTGAVSGGGGRVLKMVTEMGSASIGGISPALSANAAKSFLEATDKEKKEMQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGRWGKDTSEIKIQYSDSLRDARKEIDDGARRKAEIDVKVARLRDDLAELRNRYEDVQHRRESDREKINQWQHAIEDAQSELEMLRARWRQLTEEEKRLNGDNARIWEELQKARNDLDEETLGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRDIKDEYDYIAKQGKQDMESWYKLKVSEVQGSANRANMESSYQREEVKRMRDNIGDLRGKLGDLEAKNALLEKEVQNLNYQLNDDQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEESRVGLR---------------QMVEQVVKTHSLQQQEDTDSTRNVRGEVSTKTTFQRSAKGNVTISECDPNGKFITLENTHRSKDENLGEHRLKRKLDNRREIV-YTIPPNTVLKA---GRTMKIYARDQGGIHNPPDTLVFDGENTWGIGANVVTSLINKDGDERATHTQKTI 585
BLAST of ifb vs. uniprot
Match: gi|46576384|sp|Q19289|IFB1_CAEEL (RecName: Full=Intermediate filament protein ifb-1; AltName: Full=Cel IF B1; AltName: Full=Intermediate filament protein B1; Short=IF-B1) HSP 1 Score: 320.087 bits (819), Expect = 2.857e-98 Identity = 210/597 (35.18%), Postives = 352/597 (58.96%), Query Frame = 1 Query: 88 YSVLAQSNIQPISGPRNVVITRTGPTIAATGNQGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGEEKATHTQRTV 1866 Y + +S IQP + R+ +R + GN + R+++M G + G S + N + + +KEK LQ LNDR NYID+V+ LE++N++L +L +L+ +WGK+T+ IK Y + RK +D A KA++++++ D + E + D+ Q SD+E I + TN ++D + E+ LR R L +E+ R + R+ EE+ + + DLD ET+ I QN+VQ+L++++EFL+++ E E++EL +L+ + +D+++F++NE+A A+RDI++EYD + + +ME+ Y LK+ E + + + + E+ R+E R+++ + ++R +L +LE +N+ LE+ + L ++ + R++E+ L + E + +V ELQ LLD K L+ EIA YRKMLEGEE RV G + + + ++ QQ + T++ V+GE+S KT+FQR+AKGNVTI EC P+GKFI LEN+ ++ E++ + + R D GR I Y IPA +++P GKN I+A+ Q + L E+ WG GA ++T+L N GEE+ATHTQ+T+ Sbjct: 10 YEMQYRSTIQPRTAVRSQ--SRQSGNYVSGGNGAGSGGRVLKMVTEMGSATVGGISPALSANAAKSFLEATDKEKKTLQGLNDRLGNYIDRVKKLEEQNRKLVADLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAEVDVKVARHRDDLAEYRSRYEDIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQLTDEEKRVTADNSRIWEELQKARSDLDDETIGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRDIKDEYDIIAKQGKQDMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLENKNSLLEKEVQNLNYQLTDDQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEETRV----------GLTQMVEQAVKTHSLQQQENTDSTRS-----VRGEVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKIRRKLD-GRREIVYSIPANVVIKP-GKN--LTIYARDQGGINNPPESLVFDGENTWGIGANVVTSLVNKDGEERATHTQKTI 585
BLAST of ifb vs. uniprot
Match: gi|46576376|sp|P90901|IFA1_CAEEL (RecName: Full=Intermediate filament protein ifa-1; AltName: Full=Cel IF A1; AltName: Full=Intermediate filament protein A1; Short=IF-A1) HSP 1 Score: 303.138 bits (775), Expect = 4.903e-92 Identity = 208/585 (35.56%), Postives = 345/585 (58.97%), Query Frame = 1 Query: 145 ITRTGPTI-AATGNQGTTNI----RMI----EMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDAS-DSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTG-SQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL--SESNWGTGAQILTTLQNSKGEEKATHTQR 1860 T T P+ A G + T N+ RM+ EM+ G +P N + + + RE+EK E+ +LNDR A+YI+KVR LE +N++L+ +L L+ +WGK+T I+ +Y+ ++V +K +D+ + +E ++ ++D + E + +L D + D+ ID + LS+ E EIS L+RR+A LE+E R +E RL E+ + + DLD+ETL I QN+VQ+LL++I+FL+++ ++EI+EL +L +D + ++++F++NE++ A+RDI+ EYD+ + +ME+ Y LK+QE +T +++ E +EE RL+ QL ++R +L +LE RN+ LE+ + L ++++ R +E+ ++ + E + +++ELQ+LLD K +L+ EIA YRKMLEGEE R K + + + T T+ VVKGE +++ SFQR+AKGNV+I E SPDGKFI+L+NT ++ E I + L R D R + Y +P +L GK KI+A+ Q + + +E ++G+G + T L N +GEE+ATH QR Sbjct: 11 FTSTTPSARAPLGGRTTGNVTSQDRMLKIVTEMRSGAGSGLSP-----FGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLK---------------QLVEQVVKTHAITQETDTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRA-GKT--LKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 571
BLAST of ifb vs. uniprot
Match: gi|266616|sp|Q01240|NF60_DORPE (RecName: Full=60 kDa neurofilament protein; Short=NF60 [Doryteuthis pealeii]) HSP 1 Score: 289.271 bits (739), Expect = 1.676e-87 Identity = 173/385 (44.94%), Postives = 265/385 (68.83%), Query Frame = 1 Query: 223 SYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKD-ASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRK 1374 SYG +A PG NI GVN++ RE+EK ++++LN+RFANYI+KVR LE +NK+L+ EL +LK +WGKET+ IK +Y+ ++ RK +D K L++R+ + D ++ Q +L + H D+E I + QL+D E EIS LRR + LE+EK+R + + ++ +E+ +++ DL+ ET+ H+ A+N Q+L +++EF K + E++EL++L Y+D +++++FWRNE+AQA+RDIQ EYD K + ++ ++EA Y LK+QEFRT TK++ E + +EEN +LK + E+RNRL +LE RN LER L R+++EK R+ E E ++E+ + E+E+I+ ELQ L+D KLSLELEIAAYRK+LEGEE RV K Sbjct: 68 SYGATAMPGRYANISSTGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGMK 452
BLAST of ifb vs. Smed Unigenes AA
Match: SMU15011956 (SmedAsxldir_c69509_g1_i1|m.14946|m.134) HSP 1 Score: 905.205 bits (2338), Expect = 0.000e+0 Identity = 463/590 (78.47%), Postives = 539/590 (91.36%), Query Frame = 1 Query: 112 IQPISGPRNVVITRTGPTIAATGNQGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQ-FSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAELSESNWGTGAQILTTLQNSKGEEKATHTQRTVYQM* 1878 IQPISG RNVVITRTGPT++ G QG +NIR IEM KSYG+S+ PGA++NIVHNGVNNLMNGREKEKNELQ+LNDRFANYIDKVR+LEDENKRLS+EL+DLKDQWGKETARIK YDNDM+ LR+SLDQAE +KAQ+EM+IN++EDLI EAQ ELND QLH++DKETIDKM + LSDYEHEI++LR+RL GLEEEKVRDNKEI RLKEE+N LK+DL+KETLEHITA NE+QSL+DQIEFLKKIFESE+REL+SL+YKD++++KDFWRNEMAQALRDIQ EYDRK++TL +MEAQYTLKIQE RTTQ++E+ ETVQLREEN R+K+QL EMRNRLPELE RNN+LER+L++L+REI+EK+REF+ EK +LRKEL+NR+AELE I++ELQ+LLDAKLSLELEI AYRKMLEGEEYRVNRK Q +Q G S+D DH+TR++ISQQH +P TKTQ+T+V+KGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQ+EDISGY+L RNTDNGRIVIK+VIP+KTILEPTGKNRYYKIWA+G +PQGS + E SESNWG GAQI+T LQNSKGEEKATHTQRTVYQ+* Sbjct: 22 IQPISGYRNVVITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDSTENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRIKDQLAEMRNRLPELEARNNELERLLELLRREIEEKNREFDLEKNNLRKELLNRKAELEGILIELQILLDAKLSLELEIIAYRKMLEGEEYRVNRKSNQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVYQL* 611
BLAST of ifb vs. Smed Unigenes AA
Match: SMU15038947 (dd_smedV4_3871_0_1|m.24747|m.30510) HSP 1 Score: 484.952 bits (1247), Expect = 3.901e-163 Identity = 267/578 (46.19%), Postives = 398/578 (68.86%), Query Frame = 1 Query: 142 VITRTGPTIAATGNQGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDA-SDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMT-KTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAELSESNWGTGAQILTTLQNSKGEEKATHTQRTVY 1869 + +RT T N+ + ++ EM++SY S P + +H+ V++ + GRE+EK E+Q+LN+R ANYI+KVR LE +NKRL+ EL L+++WGKE RI+ALY+ +M L+K LD+AEA++++L +IN +E+ + E +++ N H D+E I+K+ QLS+ E EI LRRR+A LEEE+ R K I RL++EI + + DLD+ET+ HI +++EVQS D+I+F+K ++E++EL++L Y+D+ ++++DFWR+EM +LR++Q EYDRK+E ++ ++E + +K+QE R + +E E++ L+EEN RLK QL +R++ PE+E +N LER L+ L+RE+D + +FESE+ LR +L Q EL++I+ E Q ++D KLSLELEIAAYRK+LEGEE R ++ M+ T T I S KTQ++N++K E +AK + QRTAKGNV I E S DGKFIILENTG + EDISG+ + RN DN R +I+Y IP TIL+P G+ ++ KIW+KG +P GS++ E S +NWGTG I T L N EE+ATHTQ+T + Sbjct: 1 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGEIGLLRRRIAALEEERGRSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQLERFLEELRRELDRQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNM--------MEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKIIRNIDNDRSIIRYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTF 570
BLAST of ifb vs. Smed Unigenes AA
Match: SMU15013238 (SmedAsxldir_c85434_g1_i1|m.24146|m.11304) HSP 1 Score: 360.533 bits (924), Expect = 1.701e-114 Identity = 224/580 (38.62%), Postives = 363/580 (62.59%), Query Frame = 1 Query: 112 IQPISGPRNVVITRTGPTIAATGNQGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDAS-DSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNV-VKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAELSESNWGTGAQILTTLQNSKGEEKA 1845 + PIS R ++I RT + + ++I+ +Y P S + V N REK+K++++ LN++ A YI++VR LE +NK+ S EL +LKD+WGK+T +K Y+ +M L+K L +AE ++ + E + ++E +Q+A+ ELN + + I+ +LS+ E IS L++RL LEE K +D EI +L++EI L++DL+ +T++++ + E+Q LD++EFLK+I ++++ ELS+L Y+D + D+KDFW+ E++ A++DIQ++YD +++ L+ +E+QY +++Q+ +T K E +++EN R+K + R+R+P+LE + LER L L+ E +E R++E E KEL + + ++L+ LLD KLSL+LEIAAYRK+LEGEE R K + + ++ T +Q T K Q TN GE+SAK++F RT KGNV+I EC+ DG+ IILEN G +E+IS ++NR+ D+GR ++K+VIP KT ++ N+ KIWAKG KP G+++ E+ E+NWG G+ I T L N+ GEE+A Sbjct: 46 VSPISSQRTIIINRTNNQVPS---------QIIQRSFNYETRVIPSKSA--AYGDVGNYKKEREKDKSDMRNLNEKLAGYIEQVRFLEAQNKKQSGELSNLKDKWGKDTEEVKIRYNIEMQNLKKLLTEAEKNRGKTEFDLINLEHELQKAKDELNLSRDMENELLKKIEICEEKLSEEEALISMLKKRLGKLEEHKAKDKMEILKLRDEIQNLQRDLNNQTIKYLNVECELQGKLDEMEFLKQIHQTQLNELSALAYRDTTKDNKDFWKAELSLAMQDIQSDYDDRIQMLRSSIESQYGVRMQDTKTENAKLLMELNSIKDENKRIKNEWGSTRSRIPDLENKIISLERALVDLRHESEENKRDYEIELSSKTKELTEADSIIHETEIQLKTLLDDKLSLQLEIAAYRKLLEGEETRWTDKSSTVVVHENGTLTSNLKTFVNQVKQETIVQKKVQETNTSATGEISAKSTFNRTTKGNVSILECTTDGRCIILENIGKNKEEISDMLINRDIDHGRQLLKFVIPKKTFMDG---NKTIKIWAKGFKPVGTNDLEIPETNWGMGSDIHTILYNAVGEERA 611
BLAST of ifb vs. Smed Unigenes AA
Match: SMU15006730 (SmedAsxldir_c108652_g1_i6|m.91472|m.48315) HSP 1 Score: 283.878 bits (725), Expect = 7.949e-85 Identity = 217/622 (34.89%), Postives = 362/622 (58.20%), Query Frame = 1 Query: 100 AQSNIQPISGPRNVV--ITRT-GPTIAATGN--QGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIE---DLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKV-RDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDAS-DSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRS--------------------------TISQQHTSPMTKTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAELSESNWGTGAQILTTLQNSKGEEKATHTQ 1857 ++S +PIS PRN + + +T G + +A N QG++NI +I + + +GV ++ GR +EK +LQ+LN+RFA+YI+K R LE +NK+L E+ LK ++ ++IK +Y+ ++ LR L +E S+A LE++++S+E D +++ + L D+N + K TIDK +S +E E+ L RR G + V ++ +E+ L++++ +L++D +KE L H+T ++E+QSL + +EF K+I ++E++EL+++ Y+D + ++ +W++EM +ALRDIQNEY+ K+ ++ E+EA Y L++QE RT++T+++ ET +EEN+R+K Q+ MR+R+ +LE++N + E L+ ++ +E R E + ++L+++L Q EL + ELQ LLDAKL LELEIAAY K+LE EE RVN FS G++ L+ M+ + S MT+ + T+ S + F+RT KGN++I E G IILEN G++ E + G + R D I + I K L K + AKG+ E E+ +++WG G ++TTL +S+G EKA H Q Sbjct: 93 SRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGSSNIPLIR------------GDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLVNEIEKLKGGTVQDNSKIKEIYEVEINQLRTLLSDSEKSRAPLEVQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVEL-RRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQNEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRVKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLNLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVN-----FSADGNAT-LSQFMSFTSSSGAGGAGGAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDY----QSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRIVDGSENKISFTISGKVNLNAGEK---ISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 685
BLAST of ifb vs. Smed Unigenes AA
Match: SMU15019274 (SmedSxldir_c108927_g2_i1|m.81594|m.27374) HSP 1 Score: 280.411 bits (716), Expect = 2.150e-83 Identity = 216/631 (34.23%), Postives = 363/631 (57.53%), Query Frame = 1 Query: 100 AQSNIQPISGPRNVV--ITRT-GPTIAATGN--QGTTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIE---DLIQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKV-RDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDAS-DSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRS-----------------------------------TISQQHTSPMTKTQITNVVKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAELSESNWGTGAQILTTLQNSKGEEKATHTQ 1857 ++S +PIS PRN + + +T G + +A N QG++NI +I + + +GV ++ GR +EK +LQ+LN+RFA+YI+K R LE +NK+L+ E+ LK ++ ++IK +Y+ ++ LR ++++E SKA LE +++S+E D +++ + L D+N + K TIDK +S +E E+ L RR G + V ++ +E+ L++++ +L++D +KE L H+T ++E+QSL + +EF K+I ++E++EL+++ Y+D + ++ +W++EM +ALRDIQ EY+ K+ ++ E+EA Y L++QE RT++T+++ ET +EEN+R+K Q+ MR+R+ +LE++N + E L+ ++ +E R E + ++L+++L Q EL + ELQ LLDAKL LELEIAAY K+LE EE RVN FS G++ L+ M+ + S MT+ + T+ S + F+RT KGN++I E G IILEN G++ E + G + R D I + I K L K + AKG+ E E+ +++WG G ++TTL +S+G EKA H Q Sbjct: 93 SRSYYKPISQPRNNLKDLQKTSGMSYSAQSNSQQGSSNIPLIR------------GDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVEL-RRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLNLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVN-----FSGDGNAT-LSQFMSFTSSSGAGGAGGVGGAGGAGGAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDY----QSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK---ISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 694
BLAST of ifb vs. RefSeq Human
Match: gi|5031875|ref|NP_005563.1| (lamin isoform C [Homo sapiens]) HSP 1 Score: 144.05 bits (362), Expect = 1.315e-35 Identity = 157/575 (27.30%), Postives = 273/575 (47.48%), Query Frame = 1 Query: 232 VSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQE--------------AQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIREL-----SSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKES----AETVQLREENAR---LKEQLVEMRNRLPELELRNNDLE----RMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMS-AKTSFQRTAK--GNVTIQECSPDGKFIILENTGSQQEDISGYVLNR-NTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGEEKA 1845 S+ P + T I R +EK +LQELNDR A YID+VR LE EN L + + ++ +E + IKA Y+ ++ RK+LD +A+L++ ++ + + +E AQ L D+ L S + + ++ E E+ LR ++A LE + + KK L E L + A+N +Q++ ++++F K I+ E+RE + L+ D ++F + +A AL++++ +++ ++E + E+E Y+ K+ R + + S A +L++ R L QL +++ +L E + DLE R D +R + EK RE + ++++L Q LLD KL+L++EI AYRK+LEGEE R+ + SQ +R S + +T K E + +++SF + A+ G V ++E +GKF+ L N ++ + + + + R N D+ ++ Y P K L+ + IWA G S +L +++ WG G + T L NS GEE A Sbjct: 16 ASSTPLSPTRIT----------RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLE--------------AALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ-----------ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQ----------RSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDP--LLTYRFPPKFTLKA---GQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of ifb vs. RefSeq Human
Match: gi|544063466|ref|NP_001269554.1| (lamin isoform C [Homo sapiens]) HSP 1 Score: 144.05 bits (362), Expect = 1.315e-35 Identity = 157/575 (27.30%), Postives = 273/575 (47.48%), Query Frame = 1 Query: 232 VSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQE--------------AQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIREL-----SSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKES----AETVQLREENAR---LKEQLVEMRNRLPELELRNNDLE----RMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMS-AKTSFQRTAK--GNVTIQECSPDGKFIILENTGSQQEDISGYVLNR-NTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGEEKA 1845 S+ P + T I R +EK +LQELNDR A YID+VR LE EN L + + ++ +E + IKA Y+ ++ RK+LD +A+L++ ++ + + +E AQ L D+ L S + + ++ E E+ LR ++A LE + + KK L E L + A+N +Q++ ++++F K I+ E+RE + L+ D ++F + +A AL++++ +++ ++E + E+E Y+ K+ R + + S A +L++ R L QL +++ +L E + DLE R D +R + EK RE + ++++L Q LLD KL+L++EI AYRK+LEGEE R+ + SQ +R S + +T K E + +++SF + A+ G V ++E +GKF+ L N ++ + + + + R N D+ ++ Y P K L+ + IWA G S +L +++ WG G + T L NS GEE A Sbjct: 16 ASSTPLSPTRIT----------RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLE--------------AALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ-----------ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQ----------RSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDP--LLTYRFPPKFTLKA---GQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of ifb vs. RefSeq Human
Match: gi|27436946|ref|NP_733821.1| (lamin isoform A [Homo sapiens]) HSP 1 Score: 145.206 bits (365), Expect = 1.341e-35 Identity = 153/553 (27.67%), Postives = 267/553 (48.28%), Query Frame = 1 Query: 298 REKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQE--------------AQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIREL-----SSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKES----AETVQLREENAR---LKEQLVEMRNRLPELELRNNDLERML----DMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMS-AKTSFQRTAK--GNVTIQECSPDGKFIILENTGSQQEDISGYVLNR-NTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGEEKA 1845 R +EK +LQELNDR A YID+VR LE EN L + + ++ +E + IKA Y+ ++ RK+LD +A+L++ ++ + + +E AQ L D+ L S + + ++ E E+ LR ++A LE + + KK L E L + A+N +Q++ ++++F K I+ E+RE + L+ D ++F + +A AL++++ +++ ++E + E+E Y+ K+ R + + S A +L++ R L QL +++ +L E + DLE L D +R + EK RE + ++++L Q LLD KL+L++EI AYRK+LEGEE R+ + SQ +R S + +T K E + +++SF + A+ G V ++E +GKF+ L N ++ + + + + R N D+ ++ Y P K L+ + IWA G S +L +++ WG G + T L NS GEE A Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLE--------------AALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ-----------ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQ----------RSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDP--LLTYRFPPKFTLKA---GQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of ifb vs. RefSeq Human
Match: gi|544063468|ref|NP_001269555.1| (lamin isoform A-delta50 [Homo sapiens]) HSP 1 Score: 144.436 bits (363), Expect = 1.385e-35 Identity = 153/553 (27.67%), Postives = 267/553 (48.28%), Query Frame = 1 Query: 298 REKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQE--------------AQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIREL-----SSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKES----AETVQLREENAR---LKEQLVEMRNRLPELELRNNDLE----RMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMS-AKTSFQRTAK--GNVTIQECSPDGKFIILENTGSQQEDISGYVLNR-NTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGEEKA 1845 R +EK +LQELNDR A YID+VR LE EN L + + ++ +E + IKA Y+ ++ RK+LD +A+L++ ++ + + +E AQ L D+ L S + + ++ E E+ LR ++A LE + + KK L E L + A+N +Q++ ++++F K I+ E+RE + L+ D ++F + +A AL++++ +++ ++E + E+E Y+ K+ R + + S A +L++ R L QL +++ +L E + DLE R D +R + EK RE + ++++L Q LLD KL+L++EI AYRK+LEGEE R+ + SQ +R S + +T K E + +++SF + A+ G V ++E +GKF+ L N ++ + + + + R N D+ ++ Y P K L+ + IWA G S +L +++ WG G + T L NS GEE A Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLE--------------AALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ-----------ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQ----------RSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDP--LLTYRFPPKFTLKA---GQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of ifb vs. RefSeq Human
Match: gi|27436948|ref|NP_733822.1| (lamin isoform A-delta10 [Homo sapiens]) HSP 1 Score: 143.28 bits (360), Expect = 4.360e-35 Identity = 151/550 (27.45%), Postives = 265/550 (48.18%), Query Frame = 1 Query: 298 REKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQE--------------AQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIREL-----SSLIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKES----AETVQLREENAR---LKEQLVEMRNRLPELELRNNDLE----RMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLTDHMTRSTISQQHTSPMTKTQITNVVKGEMS-AKTSFQRTAK--GNVTIQECSPDGKFIILENTGSQQEDISGYVLNR-NTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKPQGSSEAEL---SESNWGTGAQILTTLQNSKGE 1836 R +EK +LQELNDR A YID+VR LE EN L + + ++ +E + IKA Y+ ++ RK+LD +A+L++ ++ + + +E AQ L D+ L S + + ++ E E+ LR ++A LE + + KK L E L + A+N +Q++ ++++F K I+ E+RE + L+ D ++F + +A AL++++ +++ ++E + E+E Y+ K+ R + + S A +L++ R L QL +++ +L E + DLE R D +R + EK RE + ++++L Q LLD KL+L++EI AYRK+LEGEE R+ + SQ +R S + +T K E + +++SF + A+ G V ++E +GKF+ L N ++ + + + + R N D+ ++ Y P K L+ + IWA G S +L +++ WG G + T L NS GE Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLE--------------AALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ-----------ELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQ----------RSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDD--PLLTYRFPPKFTLKA---GQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGE 536
BLAST of ifb vs. RefSeq Drosophila melanogaster
Match: gi|17136290|ref|NP_476616.1| (lamin, isoform A [Drosophila melanogaster]) HSP 1 Score: 145.591 bits (366), Expect = 2.084e-36 Identity = 153/530 (28.87%), Postives = 271/530 (51.13%), Query Frame = 1 Query: 292 NGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETI---DKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNE----MAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLT-DHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKP--QGSSEAELSESNWGTGAQILTTLQNSKGEEKA 1845 + R EK ELQ LNDR A YID+VR+LE EN RL+ E+ +D +ET IK +++ +++ R+ LD +A+ E+ I + + +E + +L+ + + + + + N+L++ ++ ++ R++L E + KE+ RL+++ + +K+L++ETL + +N +QSL +++ F +I EI E + + S+ +E + Q+L++++ +Y+ +M+ + E+++ Y KIQ + + S T + EE + ++ + + ELE N DL + L+R++D E L KEL+ + E+ + E Q L+D K+SL+LEIAAY K+L GEE R+N A + S + + TR+T S++ S K + V + E + + +AKGNV I+E P+GKF+ L N GS++ I G+ L R + Y +EP G +W+ K + S + W + T L NS+GE A Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of ifb vs. RefSeq Drosophila melanogaster
Match: gi|386769141|ref|NP_001245892.1| (lamin, isoform B [Drosophila melanogaster]) HSP 1 Score: 145.591 bits (366), Expect = 2.084e-36 Identity = 153/530 (28.87%), Postives = 271/530 (51.13%), Query Frame = 1 Query: 292 NGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETI---DKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNE----MAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLT-DHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKP--QGSSEAELSESNWGTGAQILTTLQNSKGEEKA 1845 + R EK ELQ LNDR A YID+VR+LE EN RL+ E+ +D +ET IK +++ +++ R+ LD +A+ E+ I + + +E + +L+ + + + + + N+L++ ++ ++ R++L E + KE+ RL+++ + +K+L++ETL + +N +QSL +++ F +I EI E + + S+ +E + Q+L++++ +Y+ +M+ + E+++ Y KIQ + + S T + EE + ++ + + ELE N DL + L+R++D E L KEL+ + E+ + E Q L+D K+SL+LEIAAY K+L GEE R+N A + S + + TR+T S++ S K + V + E + + +AKGNV I+E P+GKF+ L N GS++ I G+ L R + Y +EP G +W+ K + S + W + T L NS+GE A Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of ifb vs. RefSeq Drosophila melanogaster
Match: gi|386769143|ref|NP_001245893.1| (lamin, isoform C [Drosophila melanogaster]) HSP 1 Score: 145.591 bits (366), Expect = 2.084e-36 Identity = 153/530 (28.87%), Postives = 271/530 (51.13%), Query Frame = 1 Query: 292 NGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETI---DKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNE----MAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLT-DHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKP--QGSSEAELSESNWGTGAQILTTLQNSKGEEKA 1845 + R EK ELQ LNDR A YID+VR+LE EN RL+ E+ +D +ET IK +++ +++ R+ LD +A+ E+ I + + +E + +L+ + + + + + N+L++ ++ ++ R++L E + KE+ RL+++ + +K+L++ETL + +N +QSL +++ F +I EI E + + S+ +E + Q+L++++ +Y+ +M+ + E+++ Y KIQ + + S T + EE + ++ + + ELE N DL + L+R++D E L KEL+ + E+ + E Q L+D K+SL+LEIAAY K+L GEE R+N A + S + + TR+T S++ S K + V + E + + +AKGNV I+E P+GKF+ L N GS++ I G+ L R + Y +EP G +W+ K + S + W + T L NS+GE A Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of ifb vs. RefSeq Drosophila melanogaster
Match: gi|665404412|ref|NP_001285629.1| (lamin, isoform D [Drosophila melanogaster]) HSP 1 Score: 145.591 bits (366), Expect = 2.084e-36 Identity = 153/530 (28.87%), Postives = 271/530 (51.13%), Query Frame = 1 Query: 292 NGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSIEDLIQEAQIELNDVNQLHISDKETI---DKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSSLIYKDASDSKDFWRNE----MAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELELRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVNRKDAQFSQGGHSMDLT-DHMTRSTISQQHTSPMTKTQITNVVKGEMSAKTSF--QRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTILEPTGKNRYYKIWAKGQKP--QGSSEAELSESNWGTGAQILTTLQNSKGEEKA 1845 + R EK ELQ LNDR A YID+VR+LE EN RL+ E+ +D +ET IK +++ +++ R+ LD +A+ E+ I + + +E + +L+ + + + + + N+L++ ++ ++ R++L E + KE+ RL+++ + +K+L++ETL + +N +QSL +++ F +I EI E + + S+ +E + Q+L++++ +Y+ +M+ + E+++ Y KIQ + + S T + EE + ++ + + ELE N DL + L+R++D E L KEL+ + E+ + E Q L+D K+SL+LEIAAY K+L GEE R+N A + S + + TR+T S++ S K + V + E + + +AKGNV I+E P+GKF+ L N GS++ I G+ L R + Y +EP G +W+ K + S + W + T L NS+GE A Sbjct: 49 HSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEAL---KELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of ifb vs. RefSeq Drosophila melanogaster
Match: gi|24653664|ref|NP_523742.2| (lamin C, isoform A [Drosophila melanogaster]) HSP 1 Score: 125.561 bits (314), Expect = 8.939e-30 Identity = 145/548 (26.46%), Postives = 261/548 (47.63%), Query Frame = 1 Query: 190 TTNIRMIEMKKSYGVSANPGASTNIVHNGVNNLMNGREKEKNELQELNDRFANYIDKVRHLEDENKRLSEELMDLKDQWGKETARIKALYDNDMVLLRKSLDQAEASKAQLEMRINSI----EDL-------IQEAQIELNDVNQLHISDKETIDKMTNQLSDYEHEISSLRRRLAGLEEEKVRDNKEIFRLKEEINQLKKDLDKETLEHITAQNEVQSLLDQIEFLKKIFESEIRELSS-----LIYKDASDSKDFWRNEMAQALRDIQNEYDRKMETLQMEMEAQYTLKIQEFRTTQTKESAETVQLREENARLKEQLVEMRNRLPELE-------LRNNDLERMLDMLKREIDEKHREFESEKIHLRKELMNRQAXXXXXXXXXXXXXXXXXXXXXXIAAYRKMLEGEEYRVN-------RKDAQFSQGGHSMDLTDHMTRSTISQQ-HTSPMTKTQITNVVKGEMSAKT----------------SFQRTAKGNVTIQECSPDGKFIILENTGSQQEDISGYVLNRNTDNGRIVIKYVIPAKTI 1692 T N R+ S V +S + + R++EK ELQ LNDR A YID++R+LE+EN RL++EL +D +ET+ +KA+Y+ ++ RK LD+ KA+LE+ I + +DL +EA + N+ E K L+D R++ +E +N+ RL+ +++ L+K L+ ETL + +N+ QSL +++ F ++ E+ E S + D S+ + ++ Q+L++++++Y+ +M + E+E Y +IQ + + + + EE ++ ++ + +L LE R +LE +LD ++ ++ E+E +R E+ ++ + E Q L+D K+SL+LEIAAY K+L GEE R+N D+ S G H+T S S+ +P + T + G + K S AKG++ I E +G+FI L N G+++ +++G+ L R + + K+ +K + Sbjct: 7 TLNTRVSRASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLAD--------RKKFEDQAKELALENE---RLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQY-EAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQ-------LQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGS------HLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVL 529 The following BLAST results are available for this feature:
BLAST of ifb vs. uniprot
Analysis Date: 2016-03-07 (Dugesia dorotocephala BLASTX Swissprot Uniprot) Total hits: 5
BLAST of ifb vs. Smed Unigenes AA
Analysis Date: 2016-03-08 (Dugesia dorotocephala BLASTX Schmidtea mediterranea) Total hits: 5
BLAST of ifb vs. RefSeq Human
Analysis Date: 2016-03-08 (Dugesia dorotocephala BLASTX Human) Total hits: 5
BLAST of ifb vs. RefSeq Drosophila melanogaster
Analysis Date: 2016-03-08 (Dugesia dorotocephala BLASTX Drosophila melanogaster) Total hits: 5
Sequences
The following sequences are available for this feature:
mRNA sequence >Ddo_001875 ID=Ddo_001875|Name=ifb|organism=Dugesia dorotocephala|type=mRNA|length=1995bp Design Primers for ifb back to top protein sequence >Ddo_001875-protein ID=Ddo_001875-protein|Name=ifb|organism=Dugesia dorotocephala|type=polypeptide|length=626bpback to top coding sequence >Ddo_001875.1.1878 ID=Ddo_001875.1.1878|Name=Ddo_001875.1.1878|organism=Dugesia dorotocephala|type=CDS|length=1878bpback to top Gene Groups
ifb is similar in sequence to the genes of this group: GG6276
Gene Group Protein Sequences >SMU15011956 |